Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9936 | 5' | -52.6 | NC_002641.1 | + | 152046 | 0.67 | 0.963326 |
Target: 5'- aCCGAcCCACUCGcgcaacgaaagcccGCcUCACCcauCGGGUu -3' miRNA: 3'- aGGUU-GGUGAGU--------------UGuAGUGGu--GCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 152418 | 0.66 | 0.979442 |
Target: 5'- aUCCGGCCug-CAAgacaacaggaauuccCGUCcCCACGGGUc -3' miRNA: 3'- -AGGUUGGugaGUU---------------GUAGuGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 152783 | 0.68 | 0.956781 |
Target: 5'- gCCGACCccaccgaAC-CAACAggaACCGCGGGg -3' miRNA: 3'- aGGUUGG-------UGaGUUGUag-UGGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153101 | 0.66 | 0.978522 |
Target: 5'- cUCCGACgGaUCucCAUCGgCugGGGCc -3' miRNA: 3'- -AGGUUGgUgAGuuGUAGUgGugCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153340 | 0.69 | 0.918892 |
Target: 5'- uUCCAGCaCGCgagCGuagacaguaaagGCGUCAuCCGCGGGg -3' miRNA: 3'- -AGGUUG-GUGa--GU------------UGUAGU-GGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153421 | 0.66 | 0.984719 |
Target: 5'- gCCucGCCGCUUGcCAgugggaaaagUGCCGCGGGCu -3' miRNA: 3'- aGGu-UGGUGAGUuGUa---------GUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153591 | 0.67 | 0.9676 |
Target: 5'- gUCgGACCGCUUgucgGACAUagcgcggaaCGCgCAUGGGCu -3' miRNA: 3'- -AGgUUGGUGAG----UUGUA---------GUG-GUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153755 | 0.71 | 0.841163 |
Target: 5'- gUCCGACCGCUUccgcuacuAGCGaCACCGCGcgugccgcGGCg -3' miRNA: 3'- -AGGUUGGUGAG--------UUGUaGUGGUGC--------CCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153906 | 0.67 | 0.970638 |
Target: 5'- cUUAGCCACUCG-----GCCACGcGGCg -3' miRNA: 3'- aGGUUGGUGAGUuguagUGGUGC-CCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 154149 | 0.67 | 0.9676 |
Target: 5'- cUCCGcauCCACcgCAGCAaaCGCCugGGGa -3' miRNA: 3'- -AGGUu--GGUGa-GUUGUa-GUGGugCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 157252 | 0.67 | 0.973467 |
Target: 5'- gCCaAGCCGCUUGGCcgCAgCGCuGGCc -3' miRNA: 3'- aGG-UUGGUGAGUUGuaGUgGUGcCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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