miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9936 5' -52.6 NC_002641.1 + 153591 0.67 0.9676
Target:  5'- gUCgGACCGCUUgucgGACAUagcgcggaaCGCgCAUGGGCu -3'
miRNA:   3'- -AGgUUGGUGAG----UUGUA---------GUG-GUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 128882 0.67 0.9676
Target:  5'- gUCgGACCGCUUgucgGACAUagcgcggaaCGCgCAUGGGCu -3'
miRNA:   3'- -AGgUUGGUGAG----UUGUA---------GUG-GUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 128323 0.67 0.9676
Target:  5'- cUCCGcauCCACcgCAGCAaaCGCCugGGGa -3'
miRNA:   3'- -AGGUu--GGUGa-GUUGUa-GUGGugCCCg -5'
9936 5' -52.6 NC_002641.1 + 154149 0.67 0.9676
Target:  5'- cUCCGcauCCACcgCAGCAaaCGCCugGGGa -3'
miRNA:   3'- -AGGUu--GGUGa-GUUGUa-GUGGugCCCg -5'
9936 5' -52.6 NC_002641.1 + 70171 0.67 0.964345
Target:  5'- --aAACUGCUUugcgguguGCAUUACCACGGGg -3'
miRNA:   3'- aggUUGGUGAGu-------UGUAGUGGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 96045 0.67 0.964345
Target:  5'- uUCCGAUCACcaUCAAaGUcCACCagGCGGGUu -3'
miRNA:   3'- -AGGUUGGUG--AGUUgUA-GUGG--UGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 108243 0.67 0.964345
Target:  5'- uUCUAACCACacCAaacauACAUCGCCACuuGCg -3'
miRNA:   3'- -AGGUUGGUGa-GU-----UGUAGUGGUGccCG- -5'
9936 5' -52.6 NC_002641.1 + 152046 0.67 0.963326
Target:  5'- aCCGAcCCACUCGcgcaacgaaagcccGCcUCACCcauCGGGUu -3'
miRNA:   3'- aGGUU-GGUGAGU--------------UGuAGUGGu--GCCCG- -5'
9936 5' -52.6 NC_002641.1 + 130426 0.67 0.963326
Target:  5'- aCCGAcCCACUCGcgcaacgaaagcccGCcUCACCcauCGGGUu -3'
miRNA:   3'- aGGUU-GGUGAGU--------------UGuAGUGGu--GCCCG- -5'
9936 5' -52.6 NC_002641.1 + 43676 0.68 0.958673
Target:  5'- cCCAACUACuUCAGCAgcaauacccacaaaCACCGCGGu- -3'
miRNA:   3'- aGGUUGGUG-AGUUGUa-------------GUGGUGCCcg -5'
9936 5' -52.6 NC_002641.1 + 152783 0.68 0.956781
Target:  5'- gCCGACCccaccgaAC-CAACAggaACCGCGGGg -3'
miRNA:   3'- aGGUUGG-------UGaGUUGUag-UGGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 129690 0.68 0.956781
Target:  5'- gCCGACCccaccgaAC-CAACAggaACCGCGGGg -3'
miRNA:   3'- aGGUUGG-------UGaGUUGUag-UGGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 112784 0.68 0.949053
Target:  5'- aUCCAcACUAUuagUCAGCAcuaGCgCGCGGGCg -3'
miRNA:   3'- -AGGU-UGGUG---AGUUGUag-UG-GUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 96826 0.69 0.935081
Target:  5'- cUCCA--UACUCGGCGUCgACUugGGuGCu -3'
miRNA:   3'- -AGGUugGUGAGUUGUAG-UGGugCC-CG- -5'
9936 5' -52.6 NC_002641.1 + 107432 0.69 0.924536
Target:  5'- cCCAAUacaaCAGCAUCA-CGCGGGCg -3'
miRNA:   3'- aGGUUGgugaGUUGUAGUgGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 71430 0.69 0.918892
Target:  5'- cUCCAauauACCcgucuuGCUCGcCGUCGCUauaaACGGGCa -3'
miRNA:   3'- -AGGU----UGG------UGAGUuGUAGUGG----UGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 129132 0.69 0.918892
Target:  5'- uUCCAGCaCGCgagCGuagacaguaaagGCGUCAuCCGCGGGg -3'
miRNA:   3'- -AGGUUG-GUGa--GU------------UGUAGU-GGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 153340 0.69 0.918892
Target:  5'- uUCCAGCaCGCgagCGuagacaguaaagGCGUCAuCCGCGGGg -3'
miRNA:   3'- -AGGUUG-GUGa--GU------------UGUAGU-GGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 23850 0.7 0.900487
Target:  5'- aUUCAuauCCAC-CGGC-UCAUCGCGGGUa -3'
miRNA:   3'- -AGGUu--GGUGaGUUGuAGUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 118061 0.7 0.879921
Target:  5'- -gCGGCCGaUCAGCG-CGCgGCGGGCc -3'
miRNA:   3'- agGUUGGUgAGUUGUaGUGgUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.