miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9937 3' -50.4 NC_002641.1 + 152760 0.66 0.996969
Target:  5'- aACCGCGGGg----GGGGUCGGGAacuUCUa -3'
miRNA:   3'- -UGGCGCUUaguagUCUCAGCCUU---AGA- -5'
9937 3' -50.4 NC_002641.1 + 129713 0.66 0.996969
Target:  5'- aACCGCGGGg----GGGGUCGGGAacuUCUa -3'
miRNA:   3'- -UGGCGCUUaguagUCUCAGCCUU---AGA- -5'
9937 3' -50.4 NC_002641.1 + 147982 0.66 0.99574
Target:  5'- gGCCGUGGAcaUAUCugagauacgggcgGGGGUUGGggUCUg -3'
miRNA:   3'- -UGGCGCUUa-GUAG-------------UCUCAGCCuuAGA- -5'
9937 3' -50.4 NC_002641.1 + 134491 0.66 0.99574
Target:  5'- gGCCGUGGAcaUAUCugagauacgggcgGGGGUUGGggUCUg -3'
miRNA:   3'- -UGGCGCUUa-GUAG-------------UCUCAGCCuuAGA- -5'
9937 3' -50.4 NC_002641.1 + 148239 0.68 0.979233
Target:  5'- cGCUGCGggUCAcgCAuaacauGAGUCGGcuUCUc -3'
miRNA:   3'- -UGGCGCuuAGUa-GU------CUCAGCCuuAGA- -5'
9937 3' -50.4 NC_002641.1 + 86142 0.71 0.91914
Target:  5'- aGCUGCGAAUUuUguGAG-CGGggUCUu -3'
miRNA:   3'- -UGGCGCUUAGuAguCUCaGCCuuAGA- -5'
9937 3' -50.4 NC_002641.1 + 70238 0.72 0.903049
Target:  5'- --aGUGGAUCccauucauaagcgcUCAGAGUCGGAAUCUg -3'
miRNA:   3'- uggCGCUUAGu-------------AGUCUCAGCCUUAGA- -5'
9937 3' -50.4 NC_002641.1 + 100162 0.74 0.813688
Target:  5'- cGuuGCGAAUUGUUggaAGAGUUGGAAUCg -3'
miRNA:   3'- -UggCGCUUAGUAG---UCUCAGCCUUAGa -5'
9937 3' -50.4 NC_002641.1 + 153589 0.75 0.79531
Target:  5'- aGCgGCGAGgcgggcUCGUCGGGGUCGGGGcUCg -3'
miRNA:   3'- -UGgCGCUU------AGUAGUCUCAGCCUU-AGa -5'
9937 3' -50.4 NC_002641.1 + 128883 0.75 0.79531
Target:  5'- aGCgGCGAGgcgggcUCGUCGGGGUCGGGGcUCg -3'
miRNA:   3'- -UGgCGCUU------AGUAGUCUCAGCCUU-AGa -5'
9937 3' -50.4 NC_002641.1 + 70005 1.09 0.010806
Target:  5'- gACCGCGAAUCAUCAGAGUCGGAAUCUg -3'
miRNA:   3'- -UGGCGCUUAGUAGUCUCAGCCUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.