miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9938 3' -50.3 NC_002641.1 + 49138 0.66 0.995969
Target:  5'- cGGCGGCCG-AUGCAgccuguucgAGA-UCGGCCa -3'
miRNA:   3'- -UUGUCGGCuUAUGUa--------UCUgAGUCGGg -5'
9938 3' -50.3 NC_002641.1 + 96904 0.66 0.994487
Target:  5'- uAACGGCguuccCGAGUACGUGGuGCuUCGGCUa -3'
miRNA:   3'- -UUGUCG-----GCUUAUGUAUC-UG-AGUCGGg -5'
9938 3' -50.3 NC_002641.1 + 150755 0.66 0.994487
Target:  5'- -uCAGCagGAAUGCAcAGACaUCAugcuGCCCa -3'
miRNA:   3'- uuGUCGg-CUUAUGUaUCUG-AGU----CGGG- -5'
9938 3' -50.3 NC_002641.1 + 78325 0.66 0.993597
Target:  5'- gAACAGCCGAcucAUACGcAGAUaguUC-GCCUa -3'
miRNA:   3'- -UUGUCGGCU---UAUGUaUCUG---AGuCGGG- -5'
9938 3' -50.3 NC_002641.1 + 140087 0.66 0.993502
Target:  5'- --aGGUgGggUGCAUguGGACUCgauaccaAGCCCc -3'
miRNA:   3'- uugUCGgCuuAUGUA--UCUGAG-------UCGGG- -5'
9938 3' -50.3 NC_002641.1 + 113188 0.66 0.992595
Target:  5'- uAACAGCUGAGUAuCAUAccCUgAGCuCCg -3'
miRNA:   3'- -UUGUCGGCUUAU-GUAUcuGAgUCG-GG- -5'
9938 3' -50.3 NC_002641.1 + 83610 0.67 0.990217
Target:  5'- -cCGGCCGuAGUuacuaaucACAUGGGCUCuuacAGCCUc -3'
miRNA:   3'- uuGUCGGC-UUA--------UGUAUCUGAG----UCGGG- -5'
9938 3' -50.3 NC_002641.1 + 128953 0.67 0.985576
Target:  5'- gAACAGCCGGugacCAaGGACUCGaaaCCCg -3'
miRNA:   3'- -UUGUCGGCUuau-GUaUCUGAGUc--GGG- -5'
9938 3' -50.3 NC_002641.1 + 153520 0.67 0.985576
Target:  5'- gAACAGCCGGugacCAaGGACUCGaaaCCCg -3'
miRNA:   3'- -UUGUCGGCUuau-GUaUCUGAGUc--GGG- -5'
9938 3' -50.3 NC_002641.1 + 119698 0.69 0.968408
Target:  5'- cAGCA-CCGAGUcACGUAGGCUaggCGGUCCu -3'
miRNA:   3'- -UUGUcGGCUUA-UGUAUCUGA---GUCGGG- -5'
9938 3' -50.3 NC_002641.1 + 4024 0.69 0.968408
Target:  5'- cAGCA-CCGAGUcACGUAGGCUaggCGGUCCu -3'
miRNA:   3'- -UUGUcGGCUUA-UGUAUCUGA---GUCGGG- -5'
9938 3' -50.3 NC_002641.1 + 29479 0.69 0.953756
Target:  5'- cGCAGCCGAuUugGUGGGCagaagCGGUCg -3'
miRNA:   3'- uUGUCGGCUuAugUAUCUGa----GUCGGg -5'
9938 3' -50.3 NC_002641.1 + 7071 0.7 0.949476
Target:  5'- gGGCAGCagGGAUGCAUGGcACguuucugaguaCGGCCCg -3'
miRNA:   3'- -UUGUCGg-CUUAUGUAUC-UGa----------GUCGGG- -5'
9938 3' -50.3 NC_002641.1 + 157552 0.71 0.918349
Target:  5'- uGCGGCCGAGUAUcgGGAaugCAGaUCCg -3'
miRNA:   3'- uUGUCGGCUUAUGuaUCUga-GUC-GGG- -5'
9938 3' -50.3 NC_002641.1 + 124921 0.71 0.918349
Target:  5'- uGCGGCCGAGUAUcgGGAaugCAGaUCCg -3'
miRNA:   3'- uUGUCGGCUUAUGuaUCUga-GUC-GGG- -5'
9938 3' -50.3 NC_002641.1 + 131718 0.73 0.819788
Target:  5'- -uCAGCagGAAUGCAcAGACUCAugcuGCCCa -3'
miRNA:   3'- uuGUCGg-CUUAUGUaUCUGAGU----CGGG- -5'
9938 3' -50.3 NC_002641.1 + 71991 1.11 0.006633
Target:  5'- aAACAGCCGAAUACAUAGACUCAGCCCa -3'
miRNA:   3'- -UUGUCGGCUUAUGUAUCUGAGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.