miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9940 3' -44.5 NC_002641.1 + 149681 0.66 1
Target:  5'- --cUgCGggUUAUGACCggauaugggGUCGACGg- -3'
miRNA:   3'- gauAgGCuuAAUACUGG---------UAGCUGUag -5'
9940 3' -44.5 NC_002641.1 + 132791 0.66 1
Target:  5'- --cUgCGggUUAUGACCggauaugggGUCGACGg- -3'
miRNA:   3'- gauAgGCuuAAUACUGG---------UAGCUGUag -5'
9940 3' -44.5 NC_002641.1 + 89061 0.66 0.999999
Target:  5'- cCUGUCCGAgacaaauacuggGUaaUAUGACCGUUGguGCAa- -3'
miRNA:   3'- -GAUAGGCU------------UA--AUACUGGUAGC--UGUag -5'
9940 3' -44.5 NC_002641.1 + 101165 0.66 0.999998
Target:  5'- ---cCCGAAUUAaaUGaacccucGCCAcuuUCGACAUCa -3'
miRNA:   3'- gauaGGCUUAAU--AC-------UGGU---AGCUGUAG- -5'
9940 3' -44.5 NC_002641.1 + 134540 0.67 0.999997
Target:  5'- uCUAUCaCGAAcagccucUGUGugCGagaUCGGCAUCg -3'
miRNA:   3'- -GAUAG-GCUUa------AUACugGU---AGCUGUAG- -5'
9940 3' -44.5 NC_002641.1 + 147932 0.67 0.999997
Target:  5'- uCUAUCaCGAAcagccucUGUGugCGagaUCGGCAUCg -3'
miRNA:   3'- -GAUAG-GCUUa------AUACugGU---AGCUGUAG- -5'
9940 3' -44.5 NC_002641.1 + 31646 0.67 0.999997
Target:  5'- -cGUCCGggUcuucUGGCgGUCGAUcgCg -3'
miRNA:   3'- gaUAGGCuuAau--ACUGgUAGCUGuaG- -5'
9940 3' -44.5 NC_002641.1 + 54298 0.67 0.999995
Target:  5'- --uUCCGuuUUAUGGCCcgCGAguUGUCg -3'
miRNA:   3'- gauAGGCuuAAUACUGGuaGCU--GUAG- -5'
9940 3' -44.5 NC_002641.1 + 130802 0.67 0.999993
Target:  5'- -gGUCCGAAUUcgaggaGACCGcCGACAa- -3'
miRNA:   3'- gaUAGGCUUAAua----CUGGUaGCUGUag -5'
9940 3' -44.5 NC_002641.1 + 77853 0.68 0.999986
Target:  5'- ---aCUGGAUcuUGACUAUgGACAUCu -3'
miRNA:   3'- gauaGGCUUAauACUGGUAgCUGUAG- -5'
9940 3' -44.5 NC_002641.1 + 21300 0.68 0.999973
Target:  5'- -cGUCgaGGAUU-UGACCAUCGGcCAUCc -3'
miRNA:   3'- gaUAGg-CUUAAuACUGGUAGCU-GUAG- -5'
9940 3' -44.5 NC_002641.1 + 94007 0.69 0.99988
Target:  5'- --uUCCGAauAUUAUGaugcaacGCCGUCGGCAa- -3'
miRNA:   3'- gauAGGCU--UAAUAC-------UGGUAGCUGUag -5'
9940 3' -44.5 NC_002641.1 + 151671 0.7 0.999802
Target:  5'- -gGUCCGAAUUcgaggaGACCGcCGACAUg -3'
miRNA:   3'- gaUAGGCUUAAua----CUGGUaGCUGUAg -5'
9940 3' -44.5 NC_002641.1 + 77629 1.13 0.026166
Target:  5'- gCUAUCCGAAUUAUGACCAUCGACAUCa -3'
miRNA:   3'- -GAUAGGCUUAAUACUGGUAGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.