miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9941 5' -48.4 NC_002641.1 + 129301 0.66 0.999248
Target:  5'- ---cGCGUGCuGGAAGggGucaAGGGCa- -3'
miRNA:   3'- ucauCGUACGuCUUUCuuC---UUCCGcu -5'
9941 5' -48.4 NC_002641.1 + 153171 0.66 0.999248
Target:  5'- ---cGCGUGCuGGAAGggGucaAGGGCa- -3'
miRNA:   3'- ucauCGUACGuCUUUCuuC---UUCCGcu -5'
9941 5' -48.4 NC_002641.1 + 10701 0.66 0.999072
Target:  5'- gGGUGGCggGCuuAGGGGAcGAGGGCu- -3'
miRNA:   3'- -UCAUCGuaCGucUUUCUU-CUUCCGcu -5'
9941 5' -48.4 NC_002641.1 + 133452 0.66 0.998862
Target:  5'- --gGGgAUGgGGAGAGGAGGcgGGGCGc -3'
miRNA:   3'- ucaUCgUACgUCUUUCUUCU--UCCGCu -5'
9941 5' -48.4 NC_002641.1 + 149021 0.66 0.998862
Target:  5'- --gGGgAUGgGGAGAGGAGGcgGGGCGc -3'
miRNA:   3'- ucaUCgUACgUCUUUCUUCU--UCCGCu -5'
9941 5' -48.4 NC_002641.1 + 5535 0.66 0.998585
Target:  5'- cGGaGGCucgGCGGucuugccgacgaaGGGGAGGggGGCGGa -3'
miRNA:   3'- -UCaUCGua-CGUC-------------UUUCUUCuuCCGCU- -5'
9941 5' -48.4 NC_002641.1 + 118187 0.66 0.998585
Target:  5'- cGGaGGCucgGCGGucuugccgacgaaGGGGAGGggGGCGGa -3'
miRNA:   3'- -UCaUCGua-CGUC-------------UUUCUUCuuCCGCU- -5'
9941 5' -48.4 NC_002641.1 + 126772 0.67 0.996324
Target:  5'- gAGUGGCAuuccgcuacaauccUGCAGAAAGAuaaugauAGucGGCu- -3'
miRNA:   3'- -UCAUCGU--------------ACGUCUUUCU-------UCuuCCGcu -5'
9941 5' -48.4 NC_002641.1 + 155700 0.67 0.996324
Target:  5'- gAGUGGCAuuccgcuacaauccUGCAGAAAGAuaaugauAGucGGCu- -3'
miRNA:   3'- -UCAUCGU--------------ACGUCUUUCU-------UCuuCCGcu -5'
9941 5' -48.4 NC_002641.1 + 90045 0.68 0.995232
Target:  5'- uGUGGCGUGCuGGucGGGuGuAGGCGGg -3'
miRNA:   3'- uCAUCGUACGuCUuuCUU-CuUCCGCU- -5'
9941 5' -48.4 NC_002641.1 + 449 0.68 0.995232
Target:  5'- cGUAcCAUGCAauGGGAAGggGGCc- -3'
miRNA:   3'- uCAUcGUACGUcuUUCUUCuuCCGcu -5'
9941 5' -48.4 NC_002641.1 + 123274 0.68 0.995232
Target:  5'- cGUAcCAUGCAauGGGAAGggGGCc- -3'
miRNA:   3'- uCAUcGUACGUcuUUCUUCuuCCGcu -5'
9941 5' -48.4 NC_002641.1 + 119145 0.7 0.976341
Target:  5'- uAGUGGUccGCcuuGAGAGAguGGAGGGUGGg -3'
miRNA:   3'- -UCAUCGuaCGu--CUUUCU--UCUUCCGCU- -5'
9941 5' -48.4 NC_002641.1 + 4577 0.7 0.976341
Target:  5'- uAGUGGUccGCcuuGAGAGAguGGAGGGUGGg -3'
miRNA:   3'- -UCAUCGuaCGu--CUUUCU--UCUUCCGCU- -5'
9941 5' -48.4 NC_002641.1 + 90666 1.1 0.01175
Target:  5'- uAGUAGCAUGCAGAAAGAAGAAGGCGAa -3'
miRNA:   3'- -UCAUCGUACGUCUUUCUUCUUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.