miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9942 5' -55.6 NC_002641.1 + 119529 0.67 0.920251
Target:  5'- -aGUggUGGUCGCGUACGUGACggGGa -3'
miRNA:   3'- ggCAgaGCUAGCGCGUGCGCUGgaUC- -5'
9942 5' -55.6 NC_002641.1 + 4193 0.67 0.920251
Target:  5'- -aGUggUGGUCGCGUACGUGACggGGa -3'
miRNA:   3'- ggCAgaGCUAGCGCGUGCGCUGgaUC- -5'
9942 5' -55.6 NC_002641.1 + 76200 0.67 0.902693
Target:  5'- aCCGUCUCGAUaucCGUGUACGaUGcaauCUUAGa -3'
miRNA:   3'- -GGCAGAGCUA---GCGCGUGC-GCu---GGAUC- -5'
9942 5' -55.6 NC_002641.1 + 3128 0.68 0.883114
Target:  5'- gUCGUCUCGGcaaggcuuucUUGCGUAUgguucugcucguGCGACCUGu -3'
miRNA:   3'- -GGCAGAGCU----------AGCGCGUG------------CGCUGGAUc -5'
9942 5' -55.6 NC_002641.1 + 120595 0.68 0.883114
Target:  5'- gUCGUCUCGGcaaggcuuucUUGCGUAUgguucugcucguGCGACCUGu -3'
miRNA:   3'- -GGCAGAGCU----------AGCGCGUG------------CGCUGGAUc -5'
9942 5' -55.6 NC_002641.1 + 99249 0.68 0.883114
Target:  5'- --aUCUaGGUCGCGUGCGCGAUCgAGa -3'
miRNA:   3'- ggcAGAgCUAGCGCGUGCGCUGGaUC- -5'
9942 5' -55.6 NC_002641.1 + 38837 0.69 0.838305
Target:  5'- aCCGUC-CGGUCGaugaGCACGUGAUUc-- -3'
miRNA:   3'- -GGCAGaGCUAGCg---CGUGCGCUGGauc -5'
9942 5' -55.6 NC_002641.1 + 154302 0.7 0.787026
Target:  5'- cCCGUC-CGAuUCGCGCcguucucggGCGCGAaCUGGu -3'
miRNA:   3'- -GGCAGaGCU-AGCGCG---------UGCGCUgGAUC- -5'
9942 5' -55.6 NC_002641.1 + 128170 0.7 0.787026
Target:  5'- cCCGUC-CGAuUCGCGCcguucucggGCGCGAaCUGGu -3'
miRNA:   3'- -GGCAGaGCU-AGCGCG---------UGCGCUgGAUC- -5'
9942 5' -55.6 NC_002641.1 + 129226 0.71 0.740534
Target:  5'- cCCGUCUcCGGUCGUGUGCcCGACUg-- -3'
miRNA:   3'- -GGCAGA-GCUAGCGCGUGcGCUGGauc -5'
9942 5' -55.6 NC_002641.1 + 153246 0.71 0.740534
Target:  5'- cCCGUCUcCGGUCGUGUGCcCGACUg-- -3'
miRNA:   3'- -GGCAGA-GCUAGCGCGUGcGCUGGauc -5'
9942 5' -55.6 NC_002641.1 + 99216 0.95 0.033197
Target:  5'- aUCGUCUCGAUCGCGCACGCGACacgCUAGu -3'
miRNA:   3'- -GGCAGAGCUAGCGCGUGCGCUG---GAUC- -5'
9942 5' -55.6 NC_002641.1 + 99062 1.11 0.00313
Target:  5'- gCCGUCUCGAUCGCGCACGCGACCUAGa -3'
miRNA:   3'- -GGCAGAGCUAGCGCGUGCGCUGGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.