miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9943 3' -54 NC_002641.1 + 157519 0.66 0.96821
Target:  5'- --aGCCGcUCaugcCCGCCCGUGCCGUg -3'
miRNA:   3'- ccaUGGU-AGgcauGGUGGGCAUGGUA- -5'
9943 3' -54 NC_002641.1 + 124953 0.66 0.96821
Target:  5'- --aGCCGcUCaugcCCGCCCGUGCCGUg -3'
miRNA:   3'- ccaUGGU-AGgcauGGUGGGCAUGGUA- -5'
9943 3' -54 NC_002641.1 + 138851 0.66 0.96821
Target:  5'- uGGUACCGcUCgGaUACCuuGCCCGUAUgGa -3'
miRNA:   3'- -CCAUGGU-AGgC-AUGG--UGGGCAUGgUa -5'
9943 3' -54 NC_002641.1 + 106040 0.66 0.958019
Target:  5'- aGUACCAUCaaauCGgcuacaagGCCAUCCGUGCUu- -3'
miRNA:   3'- cCAUGGUAG----GCa-------UGGUGGGCAUGGua -5'
9943 3' -54 NC_002641.1 + 102009 0.66 0.954175
Target:  5'- uGGUACgGaUgGUACCACCCGUAg--- -3'
miRNA:   3'- -CCAUGgUaGgCAUGGUGGGCAUggua -5'
9943 3' -54 NC_002641.1 + 131374 0.67 0.941243
Target:  5'- uGGUgucuGCCAUCCcccGCCuCUCGUACCGc -3'
miRNA:   3'- -CCA----UGGUAGGca-UGGuGGGCAUGGUa -5'
9943 3' -54 NC_002641.1 + 151098 0.67 0.941243
Target:  5'- uGGUgucuGCCAUCCcccGCCuCUCGUACCGc -3'
miRNA:   3'- -CCA----UGGUAGGca-UGGuGGGCAUGGUa -5'
9943 3' -54 NC_002641.1 + 36615 0.67 0.926157
Target:  5'- -aUGCCAUuuGcuucaUGCCGCCCGUuuuuCCAa -3'
miRNA:   3'- ccAUGGUAggC-----AUGGUGGGCAu---GGUa -5'
9943 3' -54 NC_002641.1 + 80475 0.67 0.926157
Target:  5'- --gACCAUuuGUACCGCCgCGU-CCu- -3'
miRNA:   3'- ccaUGGUAggCAUGGUGG-GCAuGGua -5'
9943 3' -54 NC_002641.1 + 156096 0.68 0.896183
Target:  5'- cGGcACCAUCUGcACU-CCCGUGCCu- -3'
miRNA:   3'- -CCaUGGUAGGCaUGGuGGGCAUGGua -5'
9943 3' -54 NC_002641.1 + 143339 0.68 0.896183
Target:  5'- -uUACCAccucUCCGUGCCACCCauuCCu- -3'
miRNA:   3'- ccAUGGU----AGGCAUGGUGGGcauGGua -5'
9943 3' -54 NC_002641.1 + 126376 0.68 0.896183
Target:  5'- cGGcACCAUCUGcACU-CCCGUGCCu- -3'
miRNA:   3'- -CCaUGGUAGGCaUGGuGGGCAUGGua -5'
9943 3' -54 NC_002641.1 + 60137 0.73 0.695474
Target:  5'- -cUACCAgUCCG-GCCACCCGgcCCAUa -3'
miRNA:   3'- ccAUGGU-AGGCaUGGUGGGCauGGUA- -5'
9943 3' -54 NC_002641.1 + 101834 1.07 0.006281
Target:  5'- uGGUACCAUCCGUACCACCCGUACCAUc -3'
miRNA:   3'- -CCAUGGUAGGCAUGGUGGGCAUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.