Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9943 | 3' | -54 | NC_002641.1 | + | 157519 | 0.66 | 0.96821 |
Target: 5'- --aGCCGcUCaugcCCGCCCGUGCCGUg -3' miRNA: 3'- ccaUGGU-AGgcauGGUGGGCAUGGUA- -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 156096 | 0.68 | 0.896183 |
Target: 5'- cGGcACCAUCUGcACU-CCCGUGCCu- -3' miRNA: 3'- -CCaUGGUAGGCaUGGuGGGCAUGGua -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 151098 | 0.67 | 0.941243 |
Target: 5'- uGGUgucuGCCAUCCcccGCCuCUCGUACCGc -3' miRNA: 3'- -CCA----UGGUAGGca-UGGuGGGCAUGGUa -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 143339 | 0.68 | 0.896183 |
Target: 5'- -uUACCAccucUCCGUGCCACCCauuCCu- -3' miRNA: 3'- ccAUGGU----AGGCAUGGUGGGcauGGua -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 138851 | 0.66 | 0.96821 |
Target: 5'- uGGUACCGcUCgGaUACCuuGCCCGUAUgGa -3' miRNA: 3'- -CCAUGGU-AGgC-AUGG--UGGGCAUGgUa -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 131374 | 0.67 | 0.941243 |
Target: 5'- uGGUgucuGCCAUCCcccGCCuCUCGUACCGc -3' miRNA: 3'- -CCA----UGGUAGGca-UGGuGGGCAUGGUa -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 126376 | 0.68 | 0.896183 |
Target: 5'- cGGcACCAUCUGcACU-CCCGUGCCu- -3' miRNA: 3'- -CCaUGGUAGGCaUGGuGGGCAUGGua -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 124953 | 0.66 | 0.96821 |
Target: 5'- --aGCCGcUCaugcCCGCCCGUGCCGUg -3' miRNA: 3'- ccaUGGU-AGgcauGGUGGGCAUGGUA- -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 106040 | 0.66 | 0.958019 |
Target: 5'- aGUACCAUCaaauCGgcuacaagGCCAUCCGUGCUu- -3' miRNA: 3'- cCAUGGUAG----GCa-------UGGUGGGCAUGGua -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 102009 | 0.66 | 0.954175 |
Target: 5'- uGGUACgGaUgGUACCACCCGUAg--- -3' miRNA: 3'- -CCAUGgUaGgCAUGGUGGGCAUggua -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 101834 | 1.07 | 0.006281 |
Target: 5'- uGGUACCAUCCGUACCACCCGUACCAUc -3' miRNA: 3'- -CCAUGGUAGGCAUGGUGGGCAUGGUA- -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 80475 | 0.67 | 0.926157 |
Target: 5'- --gACCAUuuGUACCGCCgCGU-CCu- -3' miRNA: 3'- ccaUGGUAggCAUGGUGG-GCAuGGua -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 60137 | 0.73 | 0.695474 |
Target: 5'- -cUACCAgUCCG-GCCACCCGgcCCAUa -3' miRNA: 3'- ccAUGGU-AGGCaUGGUGGGCauGGUA- -5' |
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9943 | 3' | -54 | NC_002641.1 | + | 36615 | 0.67 | 0.926157 |
Target: 5'- -aUGCCAUuuGcuucaUGCCGCCCGUuuuuCCAa -3' miRNA: 3'- ccAUGGUAggC-----AUGGUGGGCAu---GGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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