miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9943 5' -53.6 NC_002641.1 + 6185 0.66 0.975389
Target:  5'- ------gACGCGGGUGGGgaucucccuccggacCGcGCGCCGg -3'
miRNA:   3'- gauacuaUGUGCCUACCU---------------GC-CGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 116882 0.66 0.975389
Target:  5'- ------gACGCGGGUGGGgaucucccuccggacCGcGCGCCGg -3'
miRNA:   3'- gauacuaUGUGCCUACCU---------------GC-CGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 60468 0.66 0.968689
Target:  5'- aUGUGcgGCcccGCGGGc-GACGGCGUCGa -3'
miRNA:   3'- gAUACuaUG---UGCCUacCUGCCGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 129875 0.66 0.965546
Target:  5'- cCUGuUGucuUGCAggcCGGAUcGAUGGCGCCGc -3'
miRNA:   3'- -GAU-ACu--AUGU---GCCUAcCUGCCGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 152597 0.66 0.965546
Target:  5'- cCUGuUGucuUGCAggcCGGAUcGAUGGCGCCGc -3'
miRNA:   3'- -GAU-ACu--AUGU---GCCUAcCUGCCGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 126191 0.66 0.962188
Target:  5'- --cUGAgGCACGGGagUGcaGAUGGUGCCGc -3'
miRNA:   3'- gauACUaUGUGCCU--AC--CUGCCGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 156281 0.66 0.962188
Target:  5'- --cUGAgGCACGGGagUGcaGAUGGUGCCGc -3'
miRNA:   3'- gauACUaUGUGCCU--AC--CUGCCGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 77752 0.67 0.958609
Target:  5'- ---cGAUACAuuuuccgaacUGGAUGG-CGGCGUCc -3'
miRNA:   3'- gauaCUAUGU----------GCCUACCuGCCGCGGc -5'
9943 5' -53.6 NC_002641.1 + 56745 0.67 0.9465
Target:  5'- -aGUGAauUGCAauuuUGGACGGCGUCGu -3'
miRNA:   3'- gaUACU--AUGUgccuACCUGCCGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 27436 0.68 0.921567
Target:  5'- ---aGAUACcaggACGGcAUGGugGGgGCCu -3'
miRNA:   3'- gauaCUAUG----UGCC-UACCugCCgCGGc -5'
9943 5' -53.6 NC_002641.1 + 5584 0.69 0.909903
Target:  5'- ---gGAU-CGCGGggGGACGcCGCCGc -3'
miRNA:   3'- gauaCUAuGUGCCuaCCUGCcGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 118138 0.69 0.909903
Target:  5'- ---gGAU-CGCGGggGGACGcCGCCGc -3'
miRNA:   3'- gauaCUAuGUGCCuaCCUGCcGCGGC- -5'
9943 5' -53.6 NC_002641.1 + 66090 0.7 0.837817
Target:  5'- ---aGGUcCGCGcGAUGGACuaGGCGCCa -3'
miRNA:   3'- gauaCUAuGUGC-CUACCUG--CCGCGGc -5'
9943 5' -53.6 NC_002641.1 + 85424 0.74 0.676983
Target:  5'- ---cGAUGCGCGGAauGAUGGCcGCCGa -3'
miRNA:   3'- gauaCUAUGUGCCUacCUGCCG-CGGC- -5'
9943 5' -53.6 NC_002641.1 + 101868 1.09 0.005359
Target:  5'- aCUAUGAUACACGGAUGGACGGCGCCGu -3'
miRNA:   3'- -GAUACUAUGUGCCUACCUGCCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.