miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9945 3' -52.8 NC_002641.1 + 12020 0.66 0.981586
Target:  5'- aUUGUAgGUCAGGAuccauAUGCCAACgaGGGCc -3'
miRNA:   3'- gGACGU-CAGUCCU-----UGCGGUUG--UCUGu -5'
9945 3' -52.8 NC_002641.1 + 126296 0.66 0.981586
Target:  5'- aCCguucGCGa-UAGGAGCGCCuuCGGACGu -3'
miRNA:   3'- -GGa---CGUcaGUCCUUGCGGuuGUCUGU- -5'
9945 3' -52.8 NC_002641.1 + 66828 0.66 0.979407
Target:  5'- aUCUGCAGUau-GGACGgCcGCGGGCAa -3'
miRNA:   3'- -GGACGUCAgucCUUGCgGuUGUCUGU- -5'
9945 3' -52.8 NC_002641.1 + 113690 0.67 0.965576
Target:  5'- uCUUGCAGgaauaagcucUUAGGGACaGCCAGCuuGGAUAu -3'
miRNA:   3'- -GGACGUC----------AGUCCUUG-CGGUUG--UCUGU- -5'
9945 3' -52.8 NC_002641.1 + 62791 0.67 0.958541
Target:  5'- gUUGCAGUCGGGAACGCa-------- -3'
miRNA:   3'- gGACGUCAGUCCUUGCGguugucugu -5'
9945 3' -52.8 NC_002641.1 + 156176 0.67 0.958541
Target:  5'- aCCguucGCG--UAGGAGCGCCuuCGGACGu -3'
miRNA:   3'- -GGa---CGUcaGUCCUUGCGGuuGUCUGU- -5'
9945 3' -52.8 NC_002641.1 + 75774 0.67 0.954678
Target:  5'- uCCUGUAcUgGGGcGCGCCAACAGu-- -3'
miRNA:   3'- -GGACGUcAgUCCuUGCGGUUGUCugu -5'
9945 3' -52.8 NC_002641.1 + 157082 0.67 0.950578
Target:  5'- uCCUGCGcgccGUUAGcGAGCGgCGgcacGCAGGCAg -3'
miRNA:   3'- -GGACGU----CAGUC-CUUGCgGU----UGUCUGU- -5'
9945 3' -52.8 NC_002641.1 + 125390 0.67 0.950578
Target:  5'- uCCUGCGcgccGUUAGcGAGCGgCGgcacGCAGGCAg -3'
miRNA:   3'- -GGACGU----CAGUC-CUUGCgGU----UGUCUGU- -5'
9945 3' -52.8 NC_002641.1 + 140118 0.68 0.936825
Target:  5'- cCCUGCAGcUgGGGAACGuCUggUGGAgAg -3'
miRNA:   3'- -GGACGUC-AgUCCUUGC-GGuuGUCUgU- -5'
9945 3' -52.8 NC_002641.1 + 118127 0.7 0.889278
Target:  5'- uUCUGC-GUCauggaucgcggGGGGACGCCGccGCGGACc -3'
miRNA:   3'- -GGACGuCAG-----------UCCUUGCGGU--UGUCUGu -5'
9945 3' -52.8 NC_002641.1 + 5595 0.7 0.889278
Target:  5'- uUCUGC-GUCauggaucgcggGGGGACGCCGccGCGGACc -3'
miRNA:   3'- -GGACGuCAG-----------UCCUUGCGGU--UGUCUGu -5'
9945 3' -52.8 NC_002641.1 + 45651 0.72 0.800203
Target:  5'- aUUGUuGUCGGGGugGCCAcaACAGugAu -3'
miRNA:   3'- gGACGuCAGUCCUugCGGU--UGUCugU- -5'
9945 3' -52.8 NC_002641.1 + 109002 1.11 0.004636
Target:  5'- cCCUGCAGUCAGGAACGCCAACAGACAc -3'
miRNA:   3'- -GGACGUCAGUCCUUGCGGUUGUCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.