miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9946 5' -46.4 NC_002641.1 + 5672 0.71 0.994061
Target:  5'- cGCcgGgaUGAGCG-GCcgauCAGCGCGCg -3'
miRNA:   3'- -CGuaUgaACUUGCaCGuu--GUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 12737 0.67 0.999876
Target:  5'- aGUAUGCaa-AGCGUGUAACGuaGCGCc -3'
miRNA:   3'- -CGUAUGaacUUGCACGUUGUugCGCG- -5'
9946 5' -46.4 NC_002641.1 + 13306 0.66 0.99996
Target:  5'- -gGUACUacUGGACGUGUAcuaccaucuACuGCGCGa -3'
miRNA:   3'- cgUAUGA--ACUUGCACGU---------UGuUGCGCg -5'
9946 5' -46.4 NC_002641.1 + 13490 0.67 0.999928
Target:  5'- cGCA-GCUUu--CGUGCAACGuucugguugguACGUGCa -3'
miRNA:   3'- -CGUaUGAAcuuGCACGUUGU-----------UGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 32744 0.72 0.988896
Target:  5'- -gAUACauucccaauuGCGUGCAugACAGCGCGCg -3'
miRNA:   3'- cgUAUGaacu------UGCACGU--UGUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 38296 0.78 0.878752
Target:  5'- cGCAUGCUcUGAucaucugGCGGCAAUGCGCg -3'
miRNA:   3'- -CGUAUGA-ACUugca---CGUUGUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 47599 0.67 0.999876
Target:  5'- cGCGUuaACgUGGGCGgucuucucgGCAAUgccaucGACGCGCa -3'
miRNA:   3'- -CGUA--UGaACUUGCa--------CGUUG------UUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 52270 0.66 0.999946
Target:  5'- -aGUugUUGuauCGUaggacaGUAAUAGCGCGCg -3'
miRNA:   3'- cgUAugAACuu-GCA------CGUUGUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 54264 0.67 0.999928
Target:  5'- ---cGCUUGAcggGCGUGaCGAguuuuCGGCGCGUa -3'
miRNA:   3'- cguaUGAACU---UGCAC-GUU-----GUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 56030 0.68 0.999572
Target:  5'- gGCAUACauuUUGcgucuGCGcGCGGCAucagccgacgccGCGCGCa -3'
miRNA:   3'- -CGUAUG---AACu----UGCaCGUUGU------------UGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 59397 0.68 0.999661
Target:  5'- uCAUugUUGAuacaGCGUGUAugAACGaugGCc -3'
miRNA:   3'- cGUAugAACU----UGCACGUugUUGCg--CG- -5'
9946 5' -46.4 NC_002641.1 + 76172 0.66 0.999969
Target:  5'- aGC-UGCUgucGACGgaauauaUGCGGCGAUGCGUa -3'
miRNA:   3'- -CGuAUGAac-UUGC-------ACGUUGUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 99268 0.7 0.99631
Target:  5'- uGCAUA--UGAAUGaUGCGGCAucuaggucGCGUGCg -3'
miRNA:   3'- -CGUAUgaACUUGC-ACGUUGU--------UGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 105550 0.66 0.99996
Target:  5'- aCGUACguuggGAAUGcucugGCAAUAgccccGCGCGCa -3'
miRNA:   3'- cGUAUGaa---CUUGCa----CGUUGU-----UGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 106774 0.66 0.99996
Target:  5'- uGUGUAUUcUGAcguuaaGUGCGucCAGCGCGCa -3'
miRNA:   3'- -CGUAUGA-ACUug----CACGUu-GUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 108628 0.73 0.981211
Target:  5'- uCGUACgauaUGAACGUGCAcuACAaauugcguuauucggACGUGCa -3'
miRNA:   3'- cGUAUGa---ACUUGCACGU--UGU---------------UGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 109212 0.73 0.983923
Target:  5'- cGCGUcuccggaggugACgggagUGAAUGUGCGcccauacacaaaagACGGCGCGCg -3'
miRNA:   3'- -CGUA-----------UGa----ACUUGCACGU--------------UGUUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 111661 0.67 0.999905
Target:  5'- gGCGaucggACUUGuAAUuUGCAACGAUGgGCa -3'
miRNA:   3'- -CGUa----UGAAC-UUGcACGUUGUUGCgCG- -5'
9946 5' -46.4 NC_002641.1 + 112998 0.72 0.990821
Target:  5'- gGCAcgcUGCUauUGuAACGUGCGcCcGCGCGCu -3'
miRNA:   3'- -CGU---AUGA--AC-UUGCACGUuGuUGCGCG- -5'
9946 5' -46.4 NC_002641.1 + 115075 1.16 0.010824
Target:  5'- gGCAUACUUGAACGUGCAACAACGCGCu -3'
miRNA:   3'- -CGUAUGAACUUGCACGUUGUUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.