miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9952 3' -61.9 NC_002641.1 + 6177 0.66 0.683614
Target:  5'- --uGGGGaucucccuccggACCGcGCGCCGgGCGCGGu -3'
miRNA:   3'- cggUCCCga----------UGGU-CGCGGCgCGUGCC- -5'
9952 3' -61.9 NC_002641.1 + 116890 0.66 0.683614
Target:  5'- --uGGGGaucucccuccggACCGcGCGCCGgGCGCGGu -3'
miRNA:   3'- cggUCCCga----------UGGU-CGCGGCgCGUGCC- -5'
9952 3' -61.9 NC_002641.1 + 104292 0.66 0.677806
Target:  5'- uGCCcagAGGGUcGCCgauacAGUGCCGcCGCACu- -3'
miRNA:   3'- -CGG---UCCCGaUGG-----UCGCGGC-GCGUGcc -5'
9952 3' -61.9 NC_002641.1 + 25831 0.66 0.658365
Target:  5'- uGCCAuGGauaaUGCCAGCaGCuUGCGgGCGGc -3'
miRNA:   3'- -CGGUcCCg---AUGGUCG-CG-GCGCgUGCC- -5'
9952 3' -61.9 NC_002641.1 + 157416 0.67 0.638847
Target:  5'- aGCCcuGGCcGCCAGCcaccagGCCGCGaCGCu- -3'
miRNA:   3'- -CGGucCCGaUGGUCG------CGGCGC-GUGcc -5'
9952 3' -61.9 NC_002641.1 + 125057 0.67 0.638847
Target:  5'- aGCCcuGGCcGCCAGCcaccagGCCGCGaCGCu- -3'
miRNA:   3'- -CGGucCCGaUGGUCG------CGGCGC-GUGcc -5'
9952 3' -61.9 NC_002641.1 + 153252 0.67 0.638847
Target:  5'- gGCCccggAGcGGCUGCCGGCGgCUGCu--CGGg -3'
miRNA:   3'- -CGG----UC-CCGAUGGUCGC-GGCGcguGCC- -5'
9952 3' -61.9 NC_002641.1 + 84430 0.67 0.61931
Target:  5'- uGCCAGGGgaAUCgaAGCGCCcGgGaCugGGc -3'
miRNA:   3'- -CGGUCCCgaUGG--UCGCGG-CgC-GugCC- -5'
9952 3' -61.9 NC_002641.1 + 129221 0.67 0.61931
Target:  5'- aGCCccggAGcGGCUGCCGGCGgCUGCu--CGGg -3'
miRNA:   3'- -CGG----UC-CCGAUGGUCGC-GGCGcguGCC- -5'
9952 3' -61.9 NC_002641.1 + 120172 0.67 0.609552
Target:  5'- aGCCGGGGCggucucagGCCGGacaguaGCCGgGaC-CGGu -3'
miRNA:   3'- -CGGUCCCGa-------UGGUCg-----CGGCgC-GuGCC- -5'
9952 3' -61.9 NC_002641.1 + 125085 0.67 0.609552
Target:  5'- aGCgAGGaGC-ACCGuGCGCgGCGCugGu -3'
miRNA:   3'- -CGgUCC-CGaUGGU-CGCGgCGCGugCc -5'
9952 3' -61.9 NC_002641.1 + 157388 0.67 0.609552
Target:  5'- aGCgAGGaGC-ACCGuGCGCgGCGCugGu -3'
miRNA:   3'- -CGgUCC-CGaUGGU-CGCGgCGCGugCc -5'
9952 3' -61.9 NC_002641.1 + 3551 0.67 0.609552
Target:  5'- aGCCGGGGCggucucagGCCGGacaguaGCCGgGaC-CGGu -3'
miRNA:   3'- -CGGUCCCGa-------UGGUCg-----CGGCgC-GuGCC- -5'
9952 3' -61.9 NC_002641.1 + 39708 0.67 0.590087
Target:  5'- cGCCAGcGCUACCuuugauGGaUGCUGCGCGCc- -3'
miRNA:   3'- -CGGUCcCGAUGG------UC-GCGGCGCGUGcc -5'
9952 3' -61.9 NC_002641.1 + 154717 0.67 0.589116
Target:  5'- gGCCGGGuaUuuuagcaaaauccAUCAGUGCCGCG-GCGGc -3'
miRNA:   3'- -CGGUCCcgA-------------UGGUCGCGGCGCgUGCC- -5'
9952 3' -61.9 NC_002641.1 + 127755 0.67 0.589116
Target:  5'- gGCCGGGuaUuuuagcaaaauccAUCAGUGCCGCG-GCGGc -3'
miRNA:   3'- -CGGUCCcgA-------------UGGUCGCGGCGCgUGCC- -5'
9952 3' -61.9 NC_002641.1 + 154462 0.68 0.570734
Target:  5'- -gCGGGGCaauuucuccCCGGCGaCC-CGCACGGa -3'
miRNA:   3'- cgGUCCCGau-------GGUCGC-GGcGCGUGCC- -5'
9952 3' -61.9 NC_002641.1 + 128010 0.68 0.570734
Target:  5'- -gCGGGGCaauuucuccCCGGCGaCC-CGCACGGa -3'
miRNA:   3'- cgGUCCCGau-------GGUCGC-GGcGCGUGCC- -5'
9952 3' -61.9 NC_002641.1 + 152450 0.68 0.561113
Target:  5'- cCCAcGGGuCUGCCAGagGCCGUgcgGCACGu -3'
miRNA:   3'- cGGU-CCC-GAUGGUCg-CGGCG---CGUGCc -5'
9952 3' -61.9 NC_002641.1 + 66267 0.68 0.561113
Target:  5'- gGUuuGGGCUAUCcGCGCaGCGCACa- -3'
miRNA:   3'- -CGguCCCGAUGGuCGCGgCGCGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.