miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9952 5' -56.7 NC_002641.1 + 157599 0.66 0.874142
Target:  5'- ---cGGCcuGGugGCUGGCGGCCaGGGCu -3'
miRNA:   3'- aagaCCG--UCugUGGCCGCUGGgUUUG- -5'
9952 5' -56.7 NC_002641.1 + 124873 0.66 0.874142
Target:  5'- ---cGGCcuGGugGCUGGCGGCCaGGGCu -3'
miRNA:   3'- aagaCCG--UCugUGGCCGCUGGgUUUG- -5'
9952 5' -56.7 NC_002641.1 + 128201 0.66 0.871938
Target:  5'- -aCUGGUGGACACUGGgGGuaugauggggagucCCCGAu- -3'
miRNA:   3'- aaGACCGUCUGUGGCCgCU--------------GGGUUug -5'
9952 5' -56.7 NC_002641.1 + 154271 0.66 0.871938
Target:  5'- -aCUGGUGGACACUGGgGGuaugauggggagucCCCGAu- -3'
miRNA:   3'- aaGACCGUCUGUGGCCgCU--------------GGGUUug -5'
9952 5' -56.7 NC_002641.1 + 69449 0.66 0.866718
Target:  5'- --gUGGCAggucGAgACUGGCGAUggCCAGGCg -3'
miRNA:   3'- aagACCGU----CUgUGGCCGCUG--GGUUUG- -5'
9952 5' -56.7 NC_002641.1 + 104103 0.66 0.859079
Target:  5'- ---cGGCGGcACAuguaUCGGCGACCCucugGGCa -3'
miRNA:   3'- aagaCCGUC-UGU----GGCCGCUGGGu---UUG- -5'
9952 5' -56.7 NC_002641.1 + 153825 0.67 0.800173
Target:  5'- --gUGGCccgGGACGCCcuaGGCGACCCc--- -3'
miRNA:   3'- aagACCG---UCUGUGG---CCGCUGGGuuug -5'
9952 5' -56.7 NC_002641.1 + 128647 0.67 0.800173
Target:  5'- --gUGGCccgGGACGCCcuaGGCGACCCc--- -3'
miRNA:   3'- aagACCG---UCUGUGG---CCGCUGGGuuug -5'
9952 5' -56.7 NC_002641.1 + 154018 0.67 0.791073
Target:  5'- aUCUgGGCGGGguCGCCuagGGCGuCCCGGGCc -3'
miRNA:   3'- aAGA-CCGUCU--GUGG---CCGCuGGGUUUG- -5'
9952 5' -56.7 NC_002641.1 + 128455 0.67 0.791073
Target:  5'- aUCUgGGCGGGguCGCCuagGGCGuCCCGGGCc -3'
miRNA:   3'- aAGA-CCGUCU--GUGG---CCGCuGGGUUUG- -5'
9952 5' -56.7 NC_002641.1 + 95065 0.68 0.776215
Target:  5'- gUC-GGCAGACuguccuguaacauguACCGuuauaugucaGCGACCCAGGCc -3'
miRNA:   3'- aAGaCCGUCUG---------------UGGC----------CGCUGGGUUUG- -5'
9952 5' -56.7 NC_002641.1 + 154478 0.68 0.772447
Target:  5'- aUCUgGGCggaggaucgcgGGGCAauuucuccCCGGCGACCCGcACg -3'
miRNA:   3'- aAGA-CCG-----------UCUGU--------GGCCGCUGGGUuUG- -5'
9952 5' -56.7 NC_002641.1 + 127994 0.68 0.772447
Target:  5'- aUCUgGGCggaggaucgcgGGGCAauuucuccCCGGCGACCCGcACg -3'
miRNA:   3'- aAGA-CCG-----------UCUGU--------GGCCGCUGGGUuUG- -5'
9952 5' -56.7 NC_002641.1 + 60555 0.68 0.762938
Target:  5'- ---cGGCGGACACUGGgGgaaaaggccaACCCAAAg -3'
miRNA:   3'- aagaCCGUCUGUGGCCgC----------UGGGUUUg -5'
9952 5' -56.7 NC_002641.1 + 74688 0.68 0.733743
Target:  5'- uUUCUgGGUGGGCGCUGGCGuAUCUAAGg -3'
miRNA:   3'- -AAGA-CCGUCUGUGGCCGC-UGGGUUUg -5'
9952 5' -56.7 NC_002641.1 + 136308 0.69 0.693605
Target:  5'- gUC-GGCAGACACCG-CGuuguauccgaACCCGGGCu -3'
miRNA:   3'- aAGaCCGUCUGUGGCcGC----------UGGGUUUG- -5'
9952 5' -56.7 NC_002641.1 + 146165 0.69 0.693605
Target:  5'- gUC-GGCAGACACCG-CGuuguauccgaACCCGGGCu -3'
miRNA:   3'- aAGaCCGUCUGUGGCcGC----------UGGGUUUG- -5'
9952 5' -56.7 NC_002641.1 + 52404 0.7 0.642323
Target:  5'- --aUGGCGGGCGCCGG--GCCCGAc- -3'
miRNA:   3'- aagACCGUCUGUGGCCgcUGGGUUug -5'
9952 5' -56.7 NC_002641.1 + 153298 0.71 0.560236
Target:  5'- aUCUGGCAGACGCUuGCGuCCUGGccuGCg -3'
miRNA:   3'- aAGACCGUCUGUGGcCGCuGGGUU---UG- -5'
9952 5' -56.7 NC_002641.1 + 129175 0.71 0.560236
Target:  5'- aUCUGGCAGACGCUuGCGuCCUGGccuGCg -3'
miRNA:   3'- aAGACCGUCUGUGGcCGCuGGGUU---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.