Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9953 | 3' | -63.8 | NC_002641.1 | + | 125032 | 1.08 | 0.000602 |
Target: 5'- cGCGGCCAGCGCUGCGGCCAAGCGGCUu -3' miRNA: 3'- -CGCCGGUCGCGACGCCGGUUCGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 157440 | 1.08 | 0.000602 |
Target: 5'- cGCGGCCAGCGCUGCGGCCAAGCGGCUu -3' miRNA: 3'- -CGCCGGUCGCGACGCCGGUUCGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 157617 | 0.77 | 0.108385 |
Target: 5'- uGCGGUguauCAGCGUcGCGGCCuGGUGGCUg -3' miRNA: 3'- -CGCCG----GUCGCGaCGCCGGuUCGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 124855 | 0.77 | 0.108385 |
Target: 5'- uGCGGUguauCAGCGUcGCGGCCuGGUGGCUg -3' miRNA: 3'- -CGCCG----GUCGCGaCGCCGGuUCGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 5662 | 0.76 | 0.142553 |
Target: 5'- aGCGGCCgaucAGCGCgcgGCgGGCCGAcCGGCUc -3' miRNA: 3'- -CGCCGG----UCGCGa--CG-CCGGUUcGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 118060 | 0.76 | 0.142553 |
Target: 5'- aGCGGCCgaucAGCGCgcgGCgGGCCGAcCGGCUc -3' miRNA: 3'- -CGCCGG----UCGCGa--CG-CCGGUUcGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 125451 | 0.75 | 0.161144 |
Target: 5'- gGCGG-CAGaGCUGCGG-CGAGCGGCg -3' miRNA: 3'- -CGCCgGUCgCGACGCCgGUUCGCCGa -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 157021 | 0.75 | 0.161144 |
Target: 5'- gGCGG-CAGaGCUGCGG-CGAGCGGCg -3' miRNA: 3'- -CGCCgGUCgCGACGCCgGUUCGCCGa -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 128761 | 0.71 | 0.302893 |
Target: 5'- -aGGCCAaacgccuccGcCGC-GUGGCCGAGUGGCUa -3' miRNA: 3'- cgCCGGU---------C-GCGaCGCCGGUUCGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 153711 | 0.71 | 0.302893 |
Target: 5'- -aGGCCAaacgccuccGcCGC-GUGGCCGAGUGGCUa -3' miRNA: 3'- cgCCGGU---------C-GCGaCGCCGGUUCGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 153251 | 0.68 | 0.407837 |
Target: 5'- -aGGCCc-CGgaGCGGCUGccGGCGGCUg -3' miRNA: 3'- cgCCGGucGCgaCGCCGGU--UCGCCGA- -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 49306 | 0.67 | 0.504628 |
Target: 5'- uCGuGCgGGCGCcuauaUGUGGgUAAGCGGCa -3' miRNA: 3'- cGC-CGgUCGCG-----ACGCCgGUUCGCCGa -5' |
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9953 | 3' | -63.8 | NC_002641.1 | + | 85167 | 0.65 | 0.567218 |
Target: 5'- uGUGG-CAGCgGCUGCGGCCAAacgaauaaaaaauUGGCa -3' miRNA: 3'- -CGCCgGUCG-CGACGCCGGUUc------------GCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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