miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9954 3' -55.2 NC_002641.1 + 27921 0.66 0.924292
Target:  5'- gUCGCUGACGuGaucaaGCGUggaacaucggAGGGGCGuuGGu -3'
miRNA:   3'- -AGCGAUUGC-Cg----CGCG----------UCCUCGCuuUC- -5'
9954 3' -55.2 NC_002641.1 + 157031 0.67 0.906831
Target:  5'- cUGCggcgAGCGGCGgccgaGCuGGAGCGGcgaGAGa -3'
miRNA:   3'- aGCGa---UUGCCGCg----CGuCCUCGCU---UUC- -5'
9954 3' -55.2 NC_002641.1 + 125441 0.67 0.906831
Target:  5'- cUGCggcgAGCGGCGgccgaGCuGGAGCGGcgaGAGa -3'
miRNA:   3'- aGCGa---UUGCCGCg----CGuCCUCGCU---UUC- -5'
9954 3' -55.2 NC_002641.1 + 127580 0.68 0.87304
Target:  5'- gUGCUgcGugGGCGgGCAGGuG-GAAAGc -3'
miRNA:   3'- aGCGA--UugCCGCgCGUCCuCgCUUUC- -5'
9954 3' -55.2 NC_002641.1 + 154892 0.68 0.87304
Target:  5'- gUGCUgcGugGGCGgGCAGGuG-GAAAGc -3'
miRNA:   3'- aGCGA--UugCCGCgCGUCCuCgCUUUC- -5'
9954 3' -55.2 NC_002641.1 + 49917 0.68 0.850121
Target:  5'- gUCGCUAcucCGGaaaGCGCaauaAGGAGUGAuGGg -3'
miRNA:   3'- -AGCGAUu--GCCg--CGCG----UCCUCGCUuUC- -5'
9954 3' -55.2 NC_002641.1 + 133567 0.68 0.842074
Target:  5'- cUGC-AGCGGCGgGUguGGGGGgGggGGg -3'
miRNA:   3'- aGCGaUUGCCGCgCG--UCCUCgCuuUC- -5'
9954 3' -55.2 NC_002641.1 + 148905 0.68 0.842074
Target:  5'- cUGC-AGCGGCGgGUguGGGGGgGggGGg -3'
miRNA:   3'- aGCGaUUGCCGCgCG--UCCUCgCuuUC- -5'
9954 3' -55.2 NC_002641.1 + 149826 0.69 0.799105
Target:  5'- -gGCUGGgGGgCGCGCAGGAcGUGGc-- -3'
miRNA:   3'- agCGAUUgCC-GCGCGUCCU-CGCUuuc -5'
9954 3' -55.2 NC_002641.1 + 132647 0.69 0.799105
Target:  5'- -gGCUGGgGGgCGCGCAGGAcGUGGc-- -3'
miRNA:   3'- agCGAUUgCC-GCGCGUCCU-CGCUuuc -5'
9954 3' -55.2 NC_002641.1 + 5985 0.69 0.799105
Target:  5'- cCGCcc-CGGCGCGCGguccGGAGgGAGAu -3'
miRNA:   3'- aGCGauuGCCGCGCGU----CCUCgCUUUc -5'
9954 3' -55.2 NC_002641.1 + 117083 0.71 0.682647
Target:  5'- cCGCgccCGGCGCGCGguccGGAGgGAGAu -3'
miRNA:   3'- aGCGauuGCCGCGCGU----CCUCgCUUUc -5'
9954 3' -55.2 NC_002641.1 + 116850 0.73 0.590385
Target:  5'- cUCGUaauuCGGCG-GUGGGAGCGGAGGg -3'
miRNA:   3'- -AGCGauu-GCCGCgCGUCCUCGCUUUC- -5'
9954 3' -55.2 NC_002641.1 + 6217 0.73 0.590385
Target:  5'- cUCGUaauuCGGCG-GUGGGAGCGGAGGg -3'
miRNA:   3'- -AGCGauu-GCCGCgCGUCCUCGCUUUC- -5'
9954 3' -55.2 NC_002641.1 + 157259 1.09 0.003241
Target:  5'- cUCGCUAACGGCGCGCAGGAGCGAAAGa -3'
miRNA:   3'- -AGCGAUUGCCGCGCGUCCUCGCUUUC- -5'
9954 3' -55.2 NC_002641.1 + 125213 1.09 0.003241
Target:  5'- cUCGCUAACGGCGCGCAGGAGCGAAAGa -3'
miRNA:   3'- -AGCGAUUGCCGCGCGUCCUCGCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.