miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9954 5' -63.6 NC_002641.1 + 75264 0.66 0.592944
Target:  5'- aUCUC-CCGCUU--GUUUGGUCGCCGc -3'
miRNA:   3'- gAGAGcGGCGAGguCGAGCCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 150619 0.66 0.564172
Target:  5'- gUC-CGUCGUUuugggaUCAGCU-GGCCGCCGa -3'
miRNA:   3'- gAGaGCGGCGA------GGUCGAgCCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 131854 0.66 0.564172
Target:  5'- gUC-CGUCGUUuugggaUCAGCU-GGCCGCCGa -3'
miRNA:   3'- gAGaGCGGCGA------GGUCGAgCCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 153422 0.67 0.545194
Target:  5'- -cCUCGCCGCUugCCAGUgggaaaaGuGCCGCgGg -3'
miRNA:   3'- gaGAGCGGCGA--GGUCGag-----C-CGGCGgC- -5'
9954 5' -63.6 NC_002641.1 + 129051 0.67 0.545194
Target:  5'- -cCUCGCCGCUugCCAGUgggaaaaGuGCCGCgGg -3'
miRNA:   3'- gaGAGCGGCGA--GGUCGag-----C-CGGCGgC- -5'
9954 5' -63.6 NC_002641.1 + 48943 0.67 0.526427
Target:  5'- aCUUUgGCCGaUCUcgaacaGGCugcaUCGGCCGCCGa -3'
miRNA:   3'- -GAGAgCGGCgAGG------UCG----AGCCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 602 0.67 0.526427
Target:  5'- uUCUCGCCgGCUCUcugaUCGGCCcucuaugugaGCCGa -3'
miRNA:   3'- gAGAGCGG-CGAGGucg-AGCCGG----------CGGC- -5'
9954 5' -63.6 NC_002641.1 + 123120 0.67 0.526427
Target:  5'- uUCUCGCCgGCUCUcugaUCGGCCcucuaugugaGCCGa -3'
miRNA:   3'- gAGAGCGG-CGAGGucg-AGCCGG----------CGGC- -5'
9954 5' -63.6 NC_002641.1 + 42741 0.67 0.507907
Target:  5'- cCUCUCGCUGCauauUCCAuCUCGGCUaaGCa- -3'
miRNA:   3'- -GAGAGCGGCG----AGGUcGAGCCGG--CGgc -5'
9954 5' -63.6 NC_002641.1 + 131735 0.68 0.489669
Target:  5'- aCUCaUGCUGC-CCAGCUCgcacaaGGUCGCUGu -3'
miRNA:   3'- -GAGaGCGGCGaGGUCGAG------CCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 49161 0.69 0.436928
Target:  5'- aUCU-GCCGCagcgUCCgcaAGUUCGGCgGCCGa -3'
miRNA:   3'- gAGAgCGGCG----AGG---UCGAGCCGgCGGC- -5'
9954 5' -63.6 NC_002641.1 + 157392 0.69 0.403638
Target:  5'- uUCguacagCGCCGUUgCCAGCga-GCCGCCGa -3'
miRNA:   3'- gAGa-----GCGGCGA-GGUCGagcCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 125080 0.69 0.403638
Target:  5'- uUCguacagCGCCGUUgCCAGCga-GCCGCCGa -3'
miRNA:   3'- gAGa-----GCGGCGA-GGUCGagcCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 138315 0.7 0.356823
Target:  5'- cCUCUCGCCaaaCUCCuGCUgaUGGCgGCCu -3'
miRNA:   3'- -GAGAGCGGc--GAGGuCGA--GCCGgCGGc -5'
9954 5' -63.6 NC_002641.1 + 125273 0.72 0.263032
Target:  5'- -gCUCGCCGC---AGCUCuGCCGCCGu -3'
miRNA:   3'- gaGAGCGGCGaggUCGAGcCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 157199 0.72 0.263032
Target:  5'- -gCUCGCCGC---AGCUCuGCCGCCGu -3'
miRNA:   3'- gaGAGCGGCGaggUCGAGcCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 157225 1.07 0.000953
Target:  5'- uCUCUCGCCGCUCCAGCUCGGCCGCCGc -3'
miRNA:   3'- -GAGAGCGGCGAGGUCGAGCCGGCGGC- -5'
9954 5' -63.6 NC_002641.1 + 125247 1.07 0.000953
Target:  5'- uCUCUCGCCGCUCCAGCUCGGCCGCCGc -3'
miRNA:   3'- -GAGAGCGGCGAGGUCGAGCCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.