Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9956 | 3' | -63.3 | NC_002641.1 | + | 149177 | 0.66 | 0.598399 |
Target: 5'- uGGCGUauauaagaCUGCGGGGCgaggaauauaGCGCCUGu -3' miRNA: 3'- uCCGCAgua-----GGCGCCCCGg---------UGCGGAU- -5' |
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9956 | 3' | -63.3 | NC_002641.1 | + | 60650 | 0.66 | 0.54996 |
Target: 5'- cGcCGUCGcCCGCGGGGCCGCa---- -3' miRNA: 3'- uCcGCAGUaGGCGCCCCGGUGcggau -5' |
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9956 | 3' | -63.3 | NC_002641.1 | + | 5592 | 0.67 | 0.49357 |
Target: 5'- -uGCGUCAUggaUCGCGGGGggACGCCg- -3' miRNA: 3'- ucCGCAGUA---GGCGCCCCggUGCGGau -5' |
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9956 | 3' | -63.3 | NC_002641.1 | + | 153315 | 1.06 | 0.000989 |
Target: 5'- aAGGCGUCAUCCGCGGGGCCACGCCUAg -3' miRNA: 3'- -UCCGCAGUAGGCGCCCCGGUGCGGAU- -5' |
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9956 | 3' | -63.3 | NC_002641.1 | + | 129157 | 1.06 | 0.000989 |
Target: 5'- aAGGCGUCAUCCGCGGGGCCACGCCUAg -3' miRNA: 3'- -UCCGCAGUAGGCGCCCCGGUGCGGAU- -5' |
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9956 | 3' | -63.3 | NC_002641.1 | + | 118130 | 0.67 | 0.49357 |
Target: 5'- -uGCGUCAUggaUCGCGGGGggACGCCg- -3' miRNA: 3'- ucCGCAGUA---GGCGCCCCggUGCGGau -5' |
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9956 | 3' | -63.3 | NC_002641.1 | + | 133296 | 0.66 | 0.598399 |
Target: 5'- uGGCGUauauaagaCUGCGGGGCgaggaauauaGCGCCUGu -3' miRNA: 3'- uCCGCAgua-----GGCGCCCCGg---------UGCGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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