miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9957 3' -56.5 NC_002641.1 + 117236 0.66 0.874003
Target:  5'- aACUGUA-GCGCC-CGCGCagaaaGCCGCc- -3'
miRNA:   3'- aUGACGUaCGCGGaGUGUG-----UGGCGuc -5'
9957 3' -56.5 NC_002641.1 + 24663 0.66 0.874003
Target:  5'- gUACUGCGUGCcCCUgUGCAUAgCGguGa -3'
miRNA:   3'- -AUGACGUACGcGGA-GUGUGUgGCguC- -5'
9957 3' -56.5 NC_002641.1 + 80094 0.66 0.850979
Target:  5'- aACUGCAacUGUGCCUCcggGCAUGCUuuGCAc -3'
miRNA:   3'- aUGACGU--ACGCGGAG---UGUGUGG--CGUc -5'
9957 3' -56.5 NC_002641.1 + 148757 0.67 0.79965
Target:  5'- aGCaGCAgGCGCCgcagcUCACAUGCCGCc- -3'
miRNA:   3'- aUGaCGUaCGCGG-----AGUGUGUGGCGuc -5'
9957 3' -56.5 NC_002641.1 + 133715 0.67 0.79965
Target:  5'- aGCaGCAgGCGCCgcagcUCACAUGCCGCc- -3'
miRNA:   3'- aUGaCGUaCGCGG-----AGUGUGUGGCGuc -5'
9957 3' -56.5 NC_002641.1 + 132248 0.68 0.770827
Target:  5'- aGCUGUcgggggaugcccuAaGCGCUUCGCugACCGCGu -3'
miRNA:   3'- aUGACG-------------UaCGCGGAGUGugUGGCGUc -5'
9957 3' -56.5 NC_002641.1 + 150224 0.68 0.770827
Target:  5'- aGCUGUcgggggaugcccuAaGCGCUUCGCugACCGCGu -3'
miRNA:   3'- aUGACG-------------UaCGCGGAGUGugUGGCGUc -5'
9957 3' -56.5 NC_002641.1 + 145876 0.69 0.702719
Target:  5'- aACUGCAUGaCGUC-CAUAUuuGCCGCAa -3'
miRNA:   3'- aUGACGUAC-GCGGaGUGUG--UGGCGUc -5'
9957 3' -56.5 NC_002641.1 + 136597 0.69 0.702719
Target:  5'- aACUGCAUGaCGUC-CAUAUuuGCCGCAa -3'
miRNA:   3'- aUGACGUAC-GCGGaGUGUG--UGGCGUc -5'
9957 3' -56.5 NC_002641.1 + 135485 0.69 0.682296
Target:  5'- gGCUGCGUGUuugucGCCUCGguUGCCGgGGa -3'
miRNA:   3'- aUGACGUACG-----CGGAGUguGUGGCgUC- -5'
9957 3' -56.5 NC_002641.1 + 146988 0.69 0.682296
Target:  5'- gGCUGCGUGUuugucGCCUCGguUGCCGgGGa -3'
miRNA:   3'- aUGACGUACG-----CGGAGUguGUGGCgUC- -5'
9957 3' -56.5 NC_002641.1 + 118316 0.7 0.661704
Target:  5'- aACUGacaaAUGCGCCccgggcccgagUACGCGCCGCAa -3'
miRNA:   3'- aUGACg---UACGCGGa----------GUGUGUGGCGUc -5'
9957 3' -56.5 NC_002641.1 + 5407 0.7 0.661704
Target:  5'- aACUGacaaAUGCGCCccgggcccgagUACGCGCCGCAa -3'
miRNA:   3'- aUGACg---UACGCGGa----------GUGUGUGGCGUc -5'
9957 3' -56.5 NC_002641.1 + 131146 1.08 0.002611
Target:  5'- gUACUGCAUGCGCCUCACACACCGCAGg -3'
miRNA:   3'- -AUGACGUACGCGGAGUGUGUGGCGUC- -5'
9957 3' -56.5 NC_002641.1 + 151326 1.08 0.002611
Target:  5'- gUACUGCAUGCGCCUCACACACCGCAGg -3'
miRNA:   3'- -AUGACGUACGCGGAGUGUGUGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.