Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9959 | 5' | -52.1 | NC_002641.1 | + | 134258 | 0.67 | 0.955776 |
Target: 5'- ---gGGUGGGGGGAUUUGUuaccuugcgcgcuGcGGGUCa -3' miRNA: 3'- aauaCUACCCCCUUGAACA-------------CcUCCAG- -5' |
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9959 | 5' | -52.1 | NC_002641.1 | + | 148214 | 0.67 | 0.955776 |
Target: 5'- ---gGGUGGGGGGAUUUGUuaccuugcgcgcuGcGGGUCa -3' miRNA: 3'- aauaCUACCCCCUUGAACA-------------CcUCCAG- -5' |
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9959 | 5' | -52.1 | NC_002641.1 | + | 125589 | 0.67 | 0.952076 |
Target: 5'- -gAUGGcggGGGGGGGgUUGUGGuGG-Cg -3' miRNA: 3'- aaUACUa--CCCCCUUgAACACCuCCaG- -5' |
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9959 | 5' | -52.1 | NC_002641.1 | + | 156883 | 0.67 | 0.952076 |
Target: 5'- -gAUGGcggGGGGGGGgUUGUGGuGG-Cg -3' miRNA: 3'- aaUACUa--CCCCCUUgAACACCuCCaG- -5' |
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9959 | 5' | -52.1 | NC_002641.1 | + | 148363 | 1.08 | 0.006291 |
Target: 5'- gUUAUGAUGGGGGAACUUGUGGAGGUCa -3' miRNA: 3'- -AAUACUACCCCCUUGAACACCUCCAG- -5' |
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9959 | 5' | -52.1 | NC_002641.1 | + | 134109 | 1.08 | 0.006291 |
Target: 5'- gUUAUGAUGGGGGAACUUGUGGAGGUCa -3' miRNA: 3'- -AAUACUACCCCCUUGAACACCUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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