miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9961 5' -52.3 NC_002641.1 + 129387 0.66 0.986601
Target:  5'- cGGGAGGA---GAGACAuCCuc-CGACg -3'
miRNA:   3'- -CCCUCCUucaCUCUGUcGGuuaGCUG- -5'
9961 5' -52.3 NC_002641.1 + 147002 0.66 0.986601
Target:  5'- -aGAGGAAGUGAGACAGgaUAugugCGGg -3'
miRNA:   3'- ccCUCCUUCACUCUGUCg-GUua--GCUg -5'
9961 5' -52.3 NC_002641.1 + 153085 0.66 0.986601
Target:  5'- cGGGAGGA---GAGACAuCCuc-CGACg -3'
miRNA:   3'- -CCCUCCUucaCUCUGUcGGuuaGCUG- -5'
9961 5' -52.3 NC_002641.1 + 135470 0.66 0.986601
Target:  5'- -aGAGGAAGUGAGACAGgaUAugugCGGg -3'
miRNA:   3'- ccCUCCUUCACUCUGUCg-GUua--GCUg -5'
9961 5' -52.3 NC_002641.1 + 125580 0.67 0.97365
Target:  5'- gGGGGGGuuGUGGuGGCGGaaCUAAUCGGg -3'
miRNA:   3'- -CCCUCCuuCACU-CUGUC--GGUUAGCUg -5'
9961 5' -52.3 NC_002641.1 + 156892 0.67 0.97365
Target:  5'- gGGGGGGuuGUGGuGGCGGaaCUAAUCGGg -3'
miRNA:   3'- -CCCUCCuuCACU-CUGUC--GGUUAGCUg -5'
9961 5' -52.3 NC_002641.1 + 146191 0.68 0.961047
Target:  5'- aGGGGGGccGUGaAGuugccCGGCguGUCGGCa -3'
miRNA:   3'- -CCCUCCuuCAC-UCu----GUCGguUAGCUG- -5'
9961 5' -52.3 NC_002641.1 + 148708 0.69 0.919531
Target:  5'- cGGcGGGGggGUGcuuccccacccccuuGuACuGCCAGUCGACa -3'
miRNA:   3'- -CC-CUCCuuCACu--------------C-UGuCGGUUAGCUG- -5'
9961 5' -52.3 NC_002641.1 + 133764 0.69 0.919531
Target:  5'- cGGcGGGGggGUGcuuccccacccccuuGuACuGCCAGUCGACa -3'
miRNA:   3'- -CC-CUCCuuCACu--------------C-UGuCGGUUAGCUG- -5'
9961 5' -52.3 NC_002641.1 + 56516 0.71 0.849069
Target:  5'- uGGGGGGGA---GGACAGCCGcgccCGACg -3'
miRNA:   3'- -CCCUCCUUcacUCUGUCGGUua--GCUG- -5'
9961 5' -52.3 NC_002641.1 + 135322 1.13 0.003526
Target:  5'- cGGGAGGAAGUGAGACAGCCAAUCGACa -3'
miRNA:   3'- -CCCUCCUUCACUCUGUCGGUUAGCUG- -5'
9961 5' -52.3 NC_002641.1 + 147151 1.13 0.003526
Target:  5'- cGGGAGGAAGUGAGACAGCCAAUCGACa -3'
miRNA:   3'- -CCCUCCUUCACUCUGUCGGUUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.