Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 147151 | 1.13 | 0.003526 |
Target: 5'- cGGGAGGAAGUGAGACAGCCAAUCGACa -3' miRNA: 3'- -CCCUCCUUCACUCUGUCGGUUAGCUG- -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 135322 | 1.13 | 0.003526 |
Target: 5'- cGGGAGGAAGUGAGACAGCCAAUCGACa -3' miRNA: 3'- -CCCUCCUUCACUCUGUCGGUUAGCUG- -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 56516 | 0.71 | 0.849069 |
Target: 5'- uGGGGGGGA---GGACAGCCGcgccCGACg -3' miRNA: 3'- -CCCUCCUUcacUCUGUCGGUua--GCUG- -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 148708 | 0.69 | 0.919531 |
Target: 5'- cGGcGGGGggGUGcuuccccacccccuuGuACuGCCAGUCGACa -3' miRNA: 3'- -CC-CUCCuuCACu--------------C-UGuCGGUUAGCUG- -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 133764 | 0.69 | 0.919531 |
Target: 5'- cGGcGGGGggGUGcuuccccacccccuuGuACuGCCAGUCGACa -3' miRNA: 3'- -CC-CUCCuuCACu--------------C-UGuCGGUUAGCUG- -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 146191 | 0.68 | 0.961047 |
Target: 5'- aGGGGGGccGUGaAGuugccCGGCguGUCGGCa -3' miRNA: 3'- -CCCUCCuuCAC-UCu----GUCGguUAGCUG- -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 125580 | 0.67 | 0.97365 |
Target: 5'- gGGGGGGuuGUGGuGGCGGaaCUAAUCGGg -3' miRNA: 3'- -CCCUCCuuCACU-CUGUC--GGUUAGCUg -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 156892 | 0.67 | 0.97365 |
Target: 5'- gGGGGGGuuGUGGuGGCGGaaCUAAUCGGg -3' miRNA: 3'- -CCCUCCuuCACU-CUGUC--GGUUAGCUg -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 147002 | 0.66 | 0.986601 |
Target: 5'- -aGAGGAAGUGAGACAGgaUAugugCGGg -3' miRNA: 3'- ccCUCCUUCACUCUGUCg-GUua--GCUg -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 129387 | 0.66 | 0.986601 |
Target: 5'- cGGGAGGA---GAGACAuCCuc-CGACg -3' miRNA: 3'- -CCCUCCUucaCUCUGUcGGuuaGCUG- -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 135470 | 0.66 | 0.986601 |
Target: 5'- -aGAGGAAGUGAGACAGgaUAugugCGGg -3' miRNA: 3'- ccCUCCUUCACUCUGUCg-GUua--GCUg -5' |
|||||||
9961 | 5' | -52.3 | NC_002641.1 | + | 153085 | 0.66 | 0.986601 |
Target: 5'- cGGGAGGA---GAGACAuCCuc-CGACg -3' miRNA: 3'- -CCCUCCUucaCUCUGUcGGuuaGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home