Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9962 | 3' | -61.8 | NC_002641.1 | + | 52159 | 0.66 | 0.716292 |
Target: 5'- aCG-GGACGUCCACcucaGGCAaaGCUGUa -3' miRNA: 3'- gGCgCCUGCAGGUGcg--CCGU--CGGCAg -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 124791 | 0.66 | 0.70684 |
Target: 5'- aCGCGGAaGggagCgAUGcCGGCAGCUGUg -3' miRNA: 3'- gGCGCCUgCa---GgUGC-GCCGUCGGCAg -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 110075 | 0.66 | 0.69733 |
Target: 5'- -aGCGGAgGUuaucuaggaCCGCGC--CAGCCGUCu -3' miRNA: 3'- ggCGCCUgCA---------GGUGCGccGUCGGCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 90326 | 0.66 | 0.69733 |
Target: 5'- uUCGCGGGagaGccUCCAUGUaGGCauuuaauccaAGCCGUCa -3' miRNA: 3'- -GGCGCCUg--C--AGGUGCG-CCG----------UCGGCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 5566 | 0.66 | 0.678171 |
Target: 5'- gCCGCGGACcgGUCaAUGUGGCGGuucCCGa- -3' miRNA: 3'- -GGCGCCUG--CAGgUGCGCCGUC---GGCag -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 118156 | 0.66 | 0.678171 |
Target: 5'- gCCGCGGACcgGUCaAUGUGGCGGuucCCGa- -3' miRNA: 3'- -GGCGCCUG--CAGgUGCGCCGUC---GGCag -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 145744 | 0.67 | 0.629808 |
Target: 5'- gCGUGGACGUCC--GCGGguGUacauuccaaaCGUCc -3' miRNA: 3'- gGCGCCUGCAGGugCGCCguCG----------GCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 136728 | 0.67 | 0.629808 |
Target: 5'- gCGUGGACGUCC--GCGGguGUacauuccaaaCGUCc -3' miRNA: 3'- gGCGCCUGCAGGugCGCCguCG----------GCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 102432 | 0.68 | 0.600753 |
Target: 5'- -aGUGuGCGUCCACGUGGUucuAGCaGUCg -3' miRNA: 3'- ggCGCcUGCAGGUGCGCCG---UCGgCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 73142 | 0.68 | 0.591101 |
Target: 5'- -aGCGGACGUUucgcacaaaCACGCGGCAaGCUu-- -3' miRNA: 3'- ggCGCCUGCAG---------GUGCGCCGU-CGGcag -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 126252 | 0.69 | 0.543357 |
Target: 5'- -gGCGGugGUCCGCGa-GCAGacggaCUGUCa -3' miRNA: 3'- ggCGCCugCAGGUGCgcCGUC-----GGCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 156220 | 0.69 | 0.543357 |
Target: 5'- -gGCGGugGUCCGCGa-GCAGacggaCUGUCa -3' miRNA: 3'- ggCGCCugCAGGUGCgcCGUC-----GGCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 60681 | 0.69 | 0.515314 |
Target: 5'- aCGCGGuugGUCUACGCGuacGCAauaucgacGCCGUCg -3' miRNA: 3'- gGCGCCug-CAGGUGCGC---CGU--------CGGCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 116619 | 0.7 | 0.478879 |
Target: 5'- aCGCGGACGuuUCCcC-CGGUGGCCaGUCu -3' miRNA: 3'- gGCGCCUGC--AGGuGcGCCGUCGG-CAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 108903 | 0.7 | 0.461141 |
Target: 5'- cCCGCGGGCaugCCAUGCGGUuagcacccuuccAGCCa-- -3' miRNA: 3'- -GGCGCCUGca-GGUGCGCCG------------UCGGcag -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 49157 | 0.7 | 0.461141 |
Target: 5'- gCCGCaG-CGUCCGCaaguuCGGCGGCCGa- -3' miRNA: 3'- -GGCGcCuGCAGGUGc----GCCGUCGGCag -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 136554 | 1.11 | 0.000805 |
Target: 5'- cCCGCGGACGUCCACGCGGCAGCCGUCg -3' miRNA: 3'- -GGCGCCUGCAGGUGCGCCGUCGGCAG- -5' |
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9962 | 3' | -61.8 | NC_002641.1 | + | 145919 | 1.11 | 0.000805 |
Target: 5'- cCCGCGGACGUCCACGCGGCAGCCGUCg -3' miRNA: 3'- -GGCGCCUGCAGGUGCGCCGUCGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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