miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9963 5' -59.1 NC_002641.1 + 116613 0.66 0.820127
Target:  5'- -aUGGCAacgcGGA-CGUUucCCCCGGUGGCCa -3'
miRNA:   3'- gaGCCGU----UCUgGCGA--GGGGCCGUUGG- -5'
9963 5' -59.1 NC_002641.1 + 28533 0.66 0.794427
Target:  5'- -cCGGCAuGAacuugaCGCUCgaguucggcauaCCCGGCAAUCc -3'
miRNA:   3'- gaGCCGUuCUg-----GCGAG------------GGGCCGUUGG- -5'
9963 5' -59.1 NC_002641.1 + 118236 0.66 0.794427
Target:  5'- -gCGcGCugaucGGCCGCUCauCCCGGCGcGCCc -3'
miRNA:   3'- gaGC-CGuu---CUGGCGAG--GGGCCGU-UGG- -5'
9963 5' -59.1 NC_002641.1 + 135612 0.67 0.776589
Target:  5'- -aCGGCA--GCCaaUCCCCGGUggUCc -3'
miRNA:   3'- gaGCCGUucUGGcgAGGGGCCGuuGG- -5'
9963 5' -59.1 NC_002641.1 + 135969 0.67 0.776589
Target:  5'- gUCGGCaAAGAgCGUUUgCCGGC--CCg -3'
miRNA:   3'- gAGCCG-UUCUgGCGAGgGGCCGuuGG- -5'
9963 5' -59.1 NC_002641.1 + 146860 0.67 0.776589
Target:  5'- -aCGGCA--GCCaaUCCCCGGUggUCc -3'
miRNA:   3'- gaGCCGUucUGGcgAGGGGCCGuuGG- -5'
9963 5' -59.1 NC_002641.1 + 146504 0.67 0.776589
Target:  5'- gUCGGCaAAGAgCGUUUgCCGGC--CCg -3'
miRNA:   3'- gAGCCG-UUCUgGCGAGgGGCCGuuGG- -5'
9963 5' -59.1 NC_002641.1 + 119244 0.67 0.767484
Target:  5'- cCUUGGUugcuGGUCGCUCgCCCGGUAcGCCc -3'
miRNA:   3'- -GAGCCGuu--CUGGCGAG-GGGCCGU-UGG- -5'
9963 5' -59.1 NC_002641.1 + 36790 0.67 0.759192
Target:  5'- -aUGGCAAGACCGCgauggcguguguuccUCCCGaGUcucaGACCa -3'
miRNA:   3'- gaGCCGUUCUGGCGa--------------GGGGC-CG----UUGG- -5'
9963 5' -59.1 NC_002641.1 + 125482 0.67 0.757337
Target:  5'- -gCGGCAaggaaGGGCCGCcgccgagUCCUaCGGCGGCa -3'
miRNA:   3'- gaGCCGU-----UCUGGCG-------AGGG-GCCGUUGg -5'
9963 5' -59.1 NC_002641.1 + 156990 0.67 0.757337
Target:  5'- -gCGGCAaggaaGGGCCGCcgccgagUCCUaCGGCGGCa -3'
miRNA:   3'- gaGCCGU-----UCUGGCG-------AGGG-GCCGUUGg -5'
9963 5' -59.1 NC_002641.1 + 42362 0.67 0.739519
Target:  5'- -cCGaaGCAAGAgCGCUgaCCCGGC-GCCa -3'
miRNA:   3'- gaGC--CGUUCUgGCGAg-GGGCCGuUGG- -5'
9963 5' -59.1 NC_002641.1 + 4478 0.68 0.720421
Target:  5'- cCUUGGUucuGGUCGCUCgCCCGGUAcGCCc -3'
miRNA:   3'- -GAGCCGuu-CUGGCGAG-GGGCCGU-UGG- -5'
9963 5' -59.1 NC_002641.1 + 129015 0.68 0.691259
Target:  5'- aUCGGCcaAAGGuauucCCGagcagCCgCCGGCAGCCg -3'
miRNA:   3'- gAGCCG--UUCU-----GGCga---GG-GGCCGUUGG- -5'
9963 5' -59.1 NC_002641.1 + 153457 0.68 0.691259
Target:  5'- aUCGGCcaAAGGuauucCCGagcagCCgCCGGCAGCCg -3'
miRNA:   3'- gAGCCG--UUCU-----GGCga---GG-GGCCGUUGG- -5'
9963 5' -59.1 NC_002641.1 + 62287 0.68 0.690278
Target:  5'- uCUCGGCGAGAUCGCggggacauuugcaUCCaCauGCAGCg -3'
miRNA:   3'- -GAGCCGUUCUGGCG-------------AGG-GgcCGUUGg -5'
9963 5' -59.1 NC_002641.1 + 120599 0.69 0.661678
Target:  5'- uCUCGGCAAGGCUuucuugcguaugGUUCugCUCGuGCGACCu -3'
miRNA:   3'- -GAGCCGUUCUGG------------CGAG--GGGC-CGUUGG- -5'
9963 5' -59.1 NC_002641.1 + 131262 0.69 0.661678
Target:  5'- aUCuGCAcgGGACauacccUGCUUCCCGGCAugCg -3'
miRNA:   3'- gAGcCGU--UCUG------GCGAGGGGCCGUugG- -5'
9963 5' -59.1 NC_002641.1 + 151210 0.69 0.661678
Target:  5'- aUCuGCAcgGGACauacccUGCUUCCCGGCAugCg -3'
miRNA:   3'- gAGcCGU--UCUG------GCGAGGGGCCGUugG- -5'
9963 5' -59.1 NC_002641.1 + 3124 0.69 0.661678
Target:  5'- uCUCGGCAAGGCUuucuugcguaugGUUCugCUCGuGCGACCu -3'
miRNA:   3'- -GAGCCGUUCUGG------------CGAG--GGGC-CGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.