Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9963 | 5' | -59.1 | NC_002641.1 | + | 131262 | 0.69 | 0.661678 |
Target: 5'- aUCuGCAcgGGACauacccUGCUUCCCGGCAugCg -3' miRNA: 3'- gAGcCGU--UCUG------GCGAGGGGCCGUugG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 157210 | 0.69 | 0.641832 |
Target: 5'- gCUCGGCc--GCCGCUCgCC-GCAGCUc -3' miRNA: 3'- -GAGCCGuucUGGCGAGgGGcCGUUGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 3124 | 0.69 | 0.661678 |
Target: 5'- uCUCGGCAAGGCUuucuugcguaugGUUCugCUCGuGCGACCu -3' miRNA: 3'- -GAGCCGUUCUGG------------CGAG--GGGC-CGUUGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 151210 | 0.69 | 0.661678 |
Target: 5'- aUCuGCAcgGGACauacccUGCUUCCCGGCAugCg -3' miRNA: 3'- gAGcCGU--UCUG------GCGAGGGGCCGUugG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 136792 | 0.7 | 0.562721 |
Target: 5'- --aGGCGucGACCGUgUCCCCGGCAu-- -3' miRNA: 3'- gagCCGUu-CUGGCG-AGGGGCCGUugg -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 145680 | 0.7 | 0.562721 |
Target: 5'- --aGGCGucGACCGUgUCCCCGGCAu-- -3' miRNA: 3'- gagCCGUu-CUGGCG-AGGGGCCGUugg -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 157173 | 0.71 | 0.524056 |
Target: 5'- aCUCGGCGGGGCCcUUCCuuGccGCAGCa -3' miRNA: 3'- -GAGCCGUUCUGGcGAGGggC--CGUUGg -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 127995 | 0.79 | 0.17929 |
Target: 5'- uCUgGGCGgaGGAUCGCggggcaauuucUCCCCGGCGACCc -3' miRNA: 3'- -GAgCCGU--UCUGGCG-----------AGGGGCCGUUGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 83002 | 0.79 | 0.17929 |
Target: 5'- aCUCGGCAuguauaaaauGGACCGaaCCCCGGCAuucaaagacucuACCg -3' miRNA: 3'- -GAGCCGU----------UCUGGCgaGGGGCCGU------------UGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 5354 | 0.79 | 0.174956 |
Target: 5'- gUCGGCAAGACCGCcgagccUCCgUCGGgAACCg -3' miRNA: 3'- gAGCCGUUCUGGCG------AGG-GGCCgUUGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 118368 | 0.79 | 0.174956 |
Target: 5'- gUCGGCAAGACCGCcgagccUCCgUCGGgAACCg -3' miRNA: 3'- gAGCCGUUCUGGCG------AGG-GGCCgUUGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 154477 | 0.79 | 0.17929 |
Target: 5'- uCUgGGCGgaGGAUCGCggggcaauuucUCCCCGGCGACCc -3' miRNA: 3'- -GAgCCGU--UCUGGCG-----------AGGGGCCGUUGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 135689 | 1.12 | 0.001104 |
Target: 5'- gCUCGGCAAGACCGCUCCCCGGCAACCg -3' miRNA: 3'- -GAGCCGUUCUGGCGAGGGGCCGUUGG- -5' |
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9963 | 5' | -59.1 | NC_002641.1 | + | 146783 | 1.12 | 0.001104 |
Target: 5'- gCUCGGCAAGACCGCUCCCCGGCAACCg -3' miRNA: 3'- -GAGCCGUUCUGGCGAGGGGCCGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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