Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9965 | 3' | -55.6 | NC_002641.1 | + | 155552 | 0.66 | 0.918772 |
Target: 5'- gGGCUGGGCGGAU-GCuUgCCUAGUGg -3' miRNA: 3'- gUCGACUCGCUUGgUGuAgGGGUCAC- -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 126920 | 0.66 | 0.918772 |
Target: 5'- gGGCUGGGCGGAU-GCuUgCCUAGUGg -3' miRNA: 3'- gUCGACUCGCUUGgUGuAgGGGUCAC- -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 127302 | 0.67 | 0.880143 |
Target: 5'- -uGCUGcagauacucuAGCGcACCAaccCAUCCCCAGUc -3' miRNA: 3'- guCGAC----------UCGCuUGGU---GUAGGGGUCAc -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 40878 | 0.67 | 0.86543 |
Target: 5'- -cGC-GAG-GGACCACAUCCCgCAGa- -3' miRNA: 3'- guCGaCUCgCUUGGUGUAGGG-GUCac -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 1567 | 0.68 | 0.825022 |
Target: 5'- gGGCUGAGgGAAUCGuccuuucgUGUgCCCAGUGu -3' miRNA: 3'- gUCGACUCgCUUGGU--------GUAgGGGUCAC- -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 122155 | 0.68 | 0.825022 |
Target: 5'- gGGCUGAGgGAAUCGuccuuucgUGUgCCCAGUGu -3' miRNA: 3'- gUCGACUCgCUUGGU--------GUAgGGGUCAC- -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 65873 | 0.69 | 0.785753 |
Target: 5'- gAGCUGuugacacugguccGCGAAUCACGUCCCUGGc- -3' miRNA: 3'- gUCGACu------------CGCUUGGUGUAGGGGUCac -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 56109 | 0.71 | 0.681527 |
Target: 5'- uCAGaaagUGAGCGAugCGCGUCUCUAGg- -3' miRNA: 3'- -GUCg---ACUCGCUugGUGUAGGGGUCac -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 134797 | 1.08 | 0.003427 |
Target: 5'- aCAGCUGAGCGAACCACAUCCCCAGUGu -3' miRNA: 3'- -GUCGACUCGCUUGGUGUAGGGGUCAC- -5' |
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9965 | 3' | -55.6 | NC_002641.1 | + | 147676 | 1.08 | 0.003427 |
Target: 5'- aCAGCUGAGCGAACCACAUCCCCAGUGu -3' miRNA: 3'- -GUCGACUCGCUUGGUGUAGGGGUCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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