miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9969 3' -57.2 NC_002641.1 + 74260 0.66 0.864505
Target:  5'- ---uGCGGCuUCUAUAGcCGCCUCUa- -3'
miRNA:   3'- uuuuCGCCG-AGGUAUCuGCGGGGGcu -5'
9969 3' -57.2 NC_002641.1 + 154800 0.66 0.832732
Target:  5'- ---uGCGGCUUaugGGugGCCCCguuuCGAa -3'
miRNA:   3'- uuuuCGCCGAGguaUCugCGGGG----GCU- -5'
9969 3' -57.2 NC_002641.1 + 127672 0.66 0.832732
Target:  5'- ---uGCGGCUUaugGGugGCCCCguuuCGAa -3'
miRNA:   3'- uuuuCGCCGAGguaUCugCGGGG----GCU- -5'
9969 3' -57.2 NC_002641.1 + 71061 0.66 0.824314
Target:  5'- gGGGAGCaGaUUCCAUgcgAGACGUCUCCGGg -3'
miRNA:   3'- -UUUUCGcC-GAGGUA---UCUGCGGGGGCU- -5'
9969 3' -57.2 NC_002641.1 + 103376 0.67 0.798042
Target:  5'- ----aCGGUUCCAguaAGAUGUCCCUGGg -3'
miRNA:   3'- uuuucGCCGAGGUa--UCUGCGGGGGCU- -5'
9969 3' -57.2 NC_002641.1 + 8320 0.67 0.786225
Target:  5'- uAGGAGCGuuuGCUUggaaagguagagugUAUAGugGCCCCCGc -3'
miRNA:   3'- -UUUUCGC---CGAG--------------GUAUCugCGGGGGCu -5'
9969 3' -57.2 NC_002641.1 + 77773 0.68 0.77042
Target:  5'- --uGGCGGCgUCCAacucGGACGCCgCCu- -3'
miRNA:   3'- uuuUCGCCG-AGGUa---UCUGCGGgGGcu -5'
9969 3' -57.2 NC_002641.1 + 105375 0.68 0.751373
Target:  5'- --uGGCGGCUCCAgAGAUGUcaUCCUGu -3'
miRNA:   3'- uuuUCGCCGAGGUaUCUGCG--GGGGCu -5'
9969 3' -57.2 NC_002641.1 + 122379 0.68 0.722038
Target:  5'- ----aCGGCcgcuacauUCCAUAGcACGCCCCCa- -3'
miRNA:   3'- uuuucGCCG--------AGGUAUC-UGCGGGGGcu -5'
9969 3' -57.2 NC_002641.1 + 1343 0.68 0.722038
Target:  5'- ----aCGGCcgcuacauUCCAUAGcACGCCCCCa- -3'
miRNA:   3'- uuuucGCCG--------AGGUAUC-UGCGGGGGcu -5'
9969 3' -57.2 NC_002641.1 + 94628 0.69 0.712092
Target:  5'- ---uGUGGUU-CGUGGACGUCUCCGAa -3'
miRNA:   3'- uuuuCGCCGAgGUAUCUGCGGGGGCU- -5'
9969 3' -57.2 NC_002641.1 + 76853 0.69 0.661523
Target:  5'- gGAAGGCGGCUauugauauaGUAGGCaauGCCCuCCGAg -3'
miRNA:   3'- -UUUUCGCCGAgg-------UAUCUG---CGGG-GGCU- -5'
9969 3' -57.2 NC_002641.1 + 77960 0.75 0.366805
Target:  5'- aAGAGGCGGCgUCCGaguUGGACGCCgCCa- -3'
miRNA:   3'- -UUUUCGCCG-AGGU---AUCUGCGGgGGcu -5'
9969 3' -57.2 NC_002641.1 + 129263 1.06 0.003039
Target:  5'- gAAAAGCGGCUCCAUAGACGCCCCCGAu -3'
miRNA:   3'- -UUUUCGCCGAGGUAUCUGCGGGGGCU- -5'
9969 3' -57.2 NC_002641.1 + 153209 1.06 0.003039
Target:  5'- gAAAAGCGGCUCCAUAGACGCCCCCGAu -3'
miRNA:   3'- -UUUUCGCCGAGGUAUCUGCGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.