miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9971 5' -61.8 NC_002641.1 + 152984 0.66 0.665364
Target:  5'- uUCGGCGCUCGUCagucuugCGUgAuGUAGCCa -3'
miRNA:   3'- uAGUCGCGGGCGGa------GCAgUcCGUCGG- -5'
9971 5' -61.8 NC_002641.1 + 129489 0.66 0.665364
Target:  5'- uUCGGCGCUCGUCagucuugCGUgAuGUAGCCa -3'
miRNA:   3'- uAGUCGCGGGCGGa------GCAgUcCGUCGG- -5'
9971 5' -61.8 NC_002641.1 + 56312 0.66 0.655469
Target:  5'- aAUUAGCGCCU-CUauaaugUCGUCGGGCgcGGCUg -3'
miRNA:   3'- -UAGUCGCGGGcGG------AGCAGUCCG--UCGG- -5'
9971 5' -61.8 NC_002641.1 + 53964 0.66 0.649524
Target:  5'- uGUCAcgauuGCGCagggaucuacaucgCGCCUCGUCcGGCAagGCCa -3'
miRNA:   3'- -UAGU-----CGCGg-------------GCGGAGCAGuCCGU--CGG- -5'
9971 5' -61.8 NC_002641.1 + 37398 0.66 0.635635
Target:  5'- -cCAGCuGCCCGcCCUCGU-GGGUuGCa -3'
miRNA:   3'- uaGUCG-CGGGC-GGAGCAgUCCGuCGg -5'
9971 5' -61.8 NC_002641.1 + 1463 0.69 0.453754
Target:  5'- uUCAGCGUacaacauagaCCGUCU-GUCGGGCAacaGCCa -3'
miRNA:   3'- uAGUCGCG----------GGCGGAgCAGUCCGU---CGG- -5'
9971 5' -61.8 NC_002641.1 + 122260 0.69 0.453754
Target:  5'- uUCAGCGUacaacauagaCCGUCU-GUCGGGCAacaGCCa -3'
miRNA:   3'- uAGUCGCG----------GGCGGAgCAGUCCGU---CGG- -5'
9971 5' -61.8 NC_002641.1 + 22519 0.69 0.444891
Target:  5'- --aGGUGCCCGCgUCGUauuGGcCAGCUa -3'
miRNA:   3'- uagUCGCGGGCGgAGCAgu-CC-GUCGG- -5'
9971 5' -61.8 NC_002641.1 + 157610 0.71 0.36979
Target:  5'- uAUCAGCGUCgCgGCCUgGUgGcuGGCGGCCa -3'
miRNA:   3'- -UAGUCGCGG-G-CGGAgCAgU--CCGUCGG- -5'
9971 5' -61.8 NC_002641.1 + 124862 0.71 0.36979
Target:  5'- uAUCAGCGUCgCgGCCUgGUgGcuGGCGGCCa -3'
miRNA:   3'- -UAGUCGCGG-G-CGGAgCAgU--CCGUCGG- -5'
9971 5' -61.8 NC_002641.1 + 49154 0.73 0.265116
Target:  5'- -gCAGCGUCCGCaa-GUUcGGCGGCCg -3'
miRNA:   3'- uaGUCGCGGGCGgagCAGuCCGUCGG- -5'
9971 5' -61.8 NC_002641.1 + 154200 1.08 0.000932
Target:  5'- aAUCAGCGCCCGCCUCGUCAGGCAGCCc -3'
miRNA:   3'- -UAGUCGCGGGCGGAGCAGUCCGUCGG- -5'
9971 5' -61.8 NC_002641.1 + 128272 1.08 0.000932
Target:  5'- aAUCAGCGCCCGCCUCGUCAGGCAGCCc -3'
miRNA:   3'- -UAGUCGCGGGCGGAGCAGUCCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.