Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9972 | 5' | -58.1 | NC_002641.1 | + | 47252 | 0.66 | 0.825087 |
Target: 5'- -uCGCCGCCACaGGGUGccUAUCCaGCa -3' miRNA: 3'- acGCGGCGGUGaUCCGUucGUAGG-CG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 125224 | 0.66 | 0.816583 |
Target: 5'- aGgGCCaaGCCGCUuGGCcgcAGCGcuggCCGCg -3' miRNA: 3'- aCgCGG--CGGUGAuCCGu--UCGUa---GGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 157249 | 0.66 | 0.816583 |
Target: 5'- aGgGCCaaGCCGCUuGGCcgcAGCGcuggCCGCg -3' miRNA: 3'- aCgCGG--CGGUGAuCCGu--UCGUa---GGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 48965 | 0.66 | 0.813999 |
Target: 5'- cUGCaucgGCCGCCgaacuugcggacGCUGcGGCAGaugcugaauuacccGCAUCCGUg -3' miRNA: 3'- -ACG----CGGCGG------------UGAU-CCGUU--------------CGUAGGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 108775 | 0.66 | 0.807914 |
Target: 5'- aUGaGCCGCCACauGGCA-GCAUCUu- -3' miRNA: 3'- -ACgCGGCGGUGauCCGUuCGUAGGcg -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 157002 | 0.66 | 0.807914 |
Target: 5'- gGcCGCCGCCGagucCUAcGGCG-GCAgagCUGCg -3' miRNA: 3'- aC-GCGGCGGU----GAU-CCGUuCGUa--GGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 45471 | 0.66 | 0.807914 |
Target: 5'- -cUGCUGCCAguaucagcauCUGGGCAuGCGcUCUGCu -3' miRNA: 3'- acGCGGCGGU----------GAUCCGUuCGU-AGGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 125470 | 0.66 | 0.807914 |
Target: 5'- gGcCGCCGCCGagucCUAcGGCG-GCAgagCUGCg -3' miRNA: 3'- aC-GCGGCGGU----GAU-CCGUuCGUa--GGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 152179 | 0.66 | 0.799088 |
Target: 5'- cGUucCCGCCACUAuguGGCGAGgAuggagaUCCGCc -3' miRNA: 3'- aCGc-GGCGGUGAU---CCGUUCgU------AGGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 130293 | 0.66 | 0.799088 |
Target: 5'- cGUucuCCGCCACUAuguGGCGAGgAuggagaUCCGCc -3' miRNA: 3'- aCGc--GGCGGUGAU---CCGUUCgU------AGGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 156969 | 0.67 | 0.780999 |
Target: 5'- cGCGCCGUCACUucGCGGucuUAUCaCGCu -3' miRNA: 3'- aCGCGGCGGUGAucCGUUc--GUAG-GCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 125504 | 0.67 | 0.780999 |
Target: 5'- cGCGCCGUCACUucGCGGucuUAUCaCGCu -3' miRNA: 3'- aCGCGGCGGUGAucCGUUc--GUAG-GCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 38458 | 0.67 | 0.752901 |
Target: 5'- -aUGCCaCCACcccggauaUAGGCGGcGCAUCUGCa -3' miRNA: 3'- acGCGGcGGUG--------AUCCGUU-CGUAGGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 38271 | 0.67 | 0.750035 |
Target: 5'- aUGCGCCGCCuauauccgGGGUGguggcauagaguauAGCcguuGUCCGCu -3' miRNA: 3'- -ACGCGGCGGuga-----UCCGU--------------UCG----UAGGCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 12757 | 0.68 | 0.714013 |
Target: 5'- uUGC-CCGCUACaucGGCAGacGCGUCCGa -3' miRNA: 3'- -ACGcGGCGGUGau-CCGUU--CGUAGGCg -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 125203 | 0.68 | 0.684093 |
Target: 5'- cGUGCCGCCGCUcgcuaacGGCGcGCAggaGCg -3' miRNA: 3'- aCGCGGCGGUGAu------CCGUuCGUaggCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 125087 | 0.68 | 0.684093 |
Target: 5'- aGCGCCGUUGCca-GCGAGCcgCCGa -3' miRNA: 3'- aCGCGGCGGUGaucCGUUCGuaGGCg -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 157385 | 0.68 | 0.684093 |
Target: 5'- aGCGCCGUUGCca-GCGAGCcgCCGa -3' miRNA: 3'- aCGCGGCGGUGaucCGUUCGuaGGCg -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 157269 | 0.68 | 0.684093 |
Target: 5'- cGUGCCGCCGCUcgcuaacGGCGcGCAggaGCg -3' miRNA: 3'- aCGCGGCGGUGAu------CCGUuCGUaggCG- -5' |
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9972 | 5' | -58.1 | NC_002641.1 | + | 109378 | 0.69 | 0.663921 |
Target: 5'- gGCG-CGCCACUGGaGaacGGCAUgaCCGCa -3' miRNA: 3'- aCGCgGCGGUGAUC-Cgu-UCGUA--GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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