miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9974 5' -61 NC_002641.1 + 21132 0.66 0.688397
Target:  5'- --cGCCGUuUUGGCuCGCcugaggcgcgaaAGCGaCUGGCUc -3'
miRNA:   3'- guuCGGCG-AACCG-GCG------------UCGC-GACCGG- -5'
9974 5' -61 NC_002641.1 + 128569 0.66 0.668592
Target:  5'- -uAGCCaCUcGGCCacGCGGCGgaGGCg -3'
miRNA:   3'- guUCGGcGAaCCGG--CGUCGCgaCCGg -5'
9974 5' -61 NC_002641.1 + 153904 0.66 0.668592
Target:  5'- -uAGCCaCUcGGCCacGCGGCGgaGGCg -3'
miRNA:   3'- guUCGGcGAaCCGG--CGUCGCgaCCGg -5'
9974 5' -61 NC_002641.1 + 5679 0.67 0.638692
Target:  5'- uCGGGCgCGCcgggaugagcGGCCGauCAGCGCgcggcgGGCCg -3'
miRNA:   3'- -GUUCG-GCGaa--------CCGGC--GUCGCGa-----CCGG- -5'
9974 5' -61 NC_002641.1 + 118043 0.67 0.638692
Target:  5'- uCGGGCgCGCcgggaugagcGGCCGauCAGCGCgcggcgGGCCg -3'
miRNA:   3'- -GUUCG-GCGaa--------CCGGC--GUCGCGa-----CCGG- -5'
9974 5' -61 NC_002641.1 + 118254 0.68 0.559256
Target:  5'- uCGAGCCGgUcgcccGCCGC-GCGCUgaucGGCCg -3'
miRNA:   3'- -GUUCGGCgAac---CGGCGuCGCGA----CCGG- -5'
9974 5' -61 NC_002641.1 + 26025 0.68 0.530089
Target:  5'- aCAAGCCGC----CCGCaAGCuGCUGGCa -3'
miRNA:   3'- -GUUCGGCGaaccGGCG-UCG-CGACCGg -5'
9974 5' -61 NC_002641.1 + 157203 0.69 0.473601
Target:  5'- --cGCCGCUc-GCCGCAGCuCUGccGCCg -3'
miRNA:   3'- guuCGGCGAacCGGCGUCGcGAC--CGG- -5'
9974 5' -61 NC_002641.1 + 125269 0.69 0.473601
Target:  5'- --cGCCGCUc-GCCGCAGCuCUGccGCCg -3'
miRNA:   3'- guuCGGCGAacCGGCGUCGcGAC--CGG- -5'
9974 5' -61 NC_002641.1 + 5468 0.7 0.411771
Target:  5'- uCGAGCCGgUcGGcCCGCcGCGCgcugaucGGCCg -3'
miRNA:   3'- -GUUCGGCgAaCC-GGCGuCGCGa------CCGG- -5'
9974 5' -61 NC_002641.1 + 84983 0.73 0.290847
Target:  5'- ---uUCGUUUGGCCGCAGCcGCUG-CCa -3'
miRNA:   3'- guucGGCGAACCGGCGUCG-CGACcGG- -5'
9974 5' -61 NC_002641.1 + 157253 1.11 0.000632
Target:  5'- cCAAGCCGCUUGGCCGCAGCGCUGGCCg -3'
miRNA:   3'- -GUUCGGCGAACCGGCGUCGCGACCGG- -5'
9974 5' -61 NC_002641.1 + 125220 1.11 0.000632
Target:  5'- cCAAGCCGCUUGGCCGCAGCGCUGGCCg -3'
miRNA:   3'- -GUUCGGCGAACCGGCGUCGCGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.