miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9979 3' -35.2 NC_002644.1 + 70 0.66 0.999981
Target:  5'- gGUGUAAccgaaAUGggUGCAUauauaaaGCAAUGCu -3'
miRNA:   3'- aCACAUU-----UAUuuGUGUAaa-----UGUUACG- -5'
9979 3' -35.2 NC_002644.1 + 2012 0.68 0.999717
Target:  5'- -aUGUGAA-AGAUGCAUgcACAAUGUg -3'
miRNA:   3'- acACAUUUaUUUGUGUAaaUGUUACG- -5'
9979 3' -35.2 NC_002644.1 + 4416 1.17 0.007016
Target:  5'- gUGUGUAAAUAAACACAUUUACAAUGCc -3'
miRNA:   3'- -ACACAUUUAUUUGUGUAAAUGUUACG- -5'
9979 3' -35.2 NC_002644.1 + 4487 0.87 0.404455
Target:  5'- cUGUGUAAcugAAGCACGUUUGCGacgccGUGCa -3'
miRNA:   3'- -ACACAUUua-UUUGUGUAAAUGU-----UACG- -5'
9979 3' -35.2 NC_002644.1 + 6421 0.67 0.999955
Target:  5'- gGUGauauGGUAGACACAgguuuugggGCAAUGg -3'
miRNA:   3'- aCACau--UUAUUUGUGUaaa------UGUUACg -5'
9979 3' -35.2 NC_002644.1 + 7390 0.7 0.997278
Target:  5'- gUGUGUGuGUGuGCAUGUUUAUAuAUGUa -3'
miRNA:   3'- -ACACAUuUAUuUGUGUAAAUGU-UACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.