miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9984 3' -55.6 NC_002654.1 + 65904 0.66 0.897059
Target:  5'- aGCGUcUUGCACguUGGGCGgaaUGUUaGCUCGu -3'
miRNA:   3'- -UGCAaAGCGUG--GCCCGU---ACAG-CGAGC- -5'
9984 3' -55.6 NC_002654.1 + 20423 0.66 0.883471
Target:  5'- aACGUuuggugguuacUUCGCGCUGGGCGgcgGaUCGUUUu -3'
miRNA:   3'- -UGCA-----------AAGCGUGGCCCGUa--C-AGCGAGc -5'
9984 3' -55.6 NC_002654.1 + 82297 0.67 0.876335
Target:  5'- gGCGgaggUCGCAggcguUCGGGCGgugGUCGCa-- -3'
miRNA:   3'- -UGCaa--AGCGU-----GGCCCGUa--CAGCGagc -5'
9984 3' -55.6 NC_002654.1 + 29376 0.69 0.764881
Target:  5'- aGCGaUUUCGUuguGCCGGGCGUGuucgaucugauccUCGC-CGa -3'
miRNA:   3'- -UGC-AAAGCG---UGGCCCGUAC-------------AGCGaGC- -5'
9984 3' -55.6 NC_002654.1 + 51183 1.08 0.003492
Target:  5'- aACGUUUCGCACCGGGCAUGUCGCUCGc -3'
miRNA:   3'- -UGCAAAGCGUGGCCCGUACAGCGAGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.