miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9985 5' -52 NC_002654.1 + 59270 0.66 0.982842
Target:  5'- cGUUCGgaaCACCGguccgaaacaauAugGCGCAGCCGacGCa -3'
miRNA:   3'- -CAAGUug-GUGGC------------UugCGUGUUGGC--CG- -5'
9985 5' -52 NC_002654.1 + 63800 0.66 0.978466
Target:  5'- aUUCGACC-CCG-GCGgACuuacaAACCGGUa -3'
miRNA:   3'- cAAGUUGGuGGCuUGCgUG-----UUGGCCG- -5'
9985 5' -52 NC_002654.1 + 48835 0.66 0.977005
Target:  5'- uUUCAuauauUCugCGGACGgACAcgguuaucugucaaaACCGGCg -3'
miRNA:   3'- cAAGUu----GGugGCUUGCgUGU---------------UGGCCG- -5'
9985 5' -52 NC_002654.1 + 82134 0.66 0.973315
Target:  5'- --gCGACCAccgcCCGAACGCcuGCGACCuccGCc -3'
miRNA:   3'- caaGUUGGU----GGCUUGCG--UGUUGGc--CG- -5'
9985 5' -52 NC_002654.1 + 50453 0.67 0.970429
Target:  5'- uGUUCGACCAUCGAcuuuaGUAgGGCCauguuGGCu -3'
miRNA:   3'- -CAAGUUGGUGGCUug---CGUgUUGG-----CCG- -5'
9985 5' -52 NC_002654.1 + 45794 0.67 0.970429
Target:  5'- --aCAAUCGCCaAGCGUGCcauuACCGGUu -3'
miRNA:   3'- caaGUUGGUGGcUUGCGUGu---UGGCCG- -5'
9985 5' -52 NC_002654.1 + 114812 0.67 0.967326
Target:  5'- -aUCGAUCAgCGAACGCACuacauuGCCa-- -3'
miRNA:   3'- caAGUUGGUgGCUUGCGUGu-----UGGccg -5'
9985 5' -52 NC_002654.1 + 39362 0.67 0.963999
Target:  5'- aUUCGGaauCUGGACGCGCAguuauAUCGGCa -3'
miRNA:   3'- cAAGUUgguGGCUUGCGUGU-----UGGCCG- -5'
9985 5' -52 NC_002654.1 + 17169 0.67 0.963999
Target:  5'- -gUCAcuACCGguuUCGGugGCAacACCGGCg -3'
miRNA:   3'- caAGU--UGGU---GGCUugCGUguUGGCCG- -5'
9985 5' -52 NC_002654.1 + 66924 0.67 0.960443
Target:  5'- --cCGACCAuUCGGACGguCAucuuAUCGGCa -3'
miRNA:   3'- caaGUUGGU-GGCUUGCguGU----UGGCCG- -5'
9985 5' -52 NC_002654.1 + 99949 0.67 0.95933
Target:  5'- -cUCGGCUGCagguagcuuaGAACGCAUAauuaaagcguaaauACCGGCu -3'
miRNA:   3'- caAGUUGGUGg---------CUUGCGUGU--------------UGGCCG- -5'
9985 5' -52 NC_002654.1 + 28247 0.67 0.956651
Target:  5'- -gUUGGCCACgGAcaaguuguAgGCGCGACgGGCa -3'
miRNA:   3'- caAGUUGGUGgCU--------UgCGUGUUGgCCG- -5'
9985 5' -52 NC_002654.1 + 45700 0.68 0.943815
Target:  5'- aUUCAACgacguCAUCGAAUGCGgAGCCaaaGGCa -3'
miRNA:   3'- cAAGUUG-----GUGGCUUGCGUgUUGG---CCG- -5'
9985 5' -52 NC_002654.1 + 112895 0.68 0.939039
Target:  5'- --gCGACCACUGGcgccagcaaACGUACGGCC-GCg -3'
miRNA:   3'- caaGUUGGUGGCU---------UGCGUGUUGGcCG- -5'
9985 5' -52 NC_002654.1 + 51772 0.68 0.934009
Target:  5'- -gUCGuacuuGCCAUCGu-CGCACAGCUuuGGCa -3'
miRNA:   3'- caAGU-----UGGUGGCuuGCGUGUUGG--CCG- -5'
9985 5' -52 NC_002654.1 + 114110 0.69 0.905037
Target:  5'- -gUCAGCCguaACCGAagACGCagucGCAGCCGaaGCa -3'
miRNA:   3'- caAGUUGG---UGGCU--UGCG----UGUUGGC--CG- -5'
9985 5' -52 NC_002654.1 + 84895 0.7 0.884643
Target:  5'- -aUCAACgaACUGAGCGCAuuauguucuuCGugCGGCg -3'
miRNA:   3'- caAGUUGg-UGGCUUGCGU----------GUugGCCG- -5'
9985 5' -52 NC_002654.1 + 102938 0.7 0.877362
Target:  5'- --gCAGCCgcgACCGAACGUuauaaAGCUGGCu -3'
miRNA:   3'- caaGUUGG---UGGCUUGCGug---UUGGCCG- -5'
9985 5' -52 NC_002654.1 + 112582 0.73 0.754181
Target:  5'- --cUAACCACacauaCGAAgGUACAACUGGCa -3'
miRNA:   3'- caaGUUGGUG-----GCUUgCGUGUUGGCCG- -5'
9985 5' -52 NC_002654.1 + 39399 0.73 0.754181
Target:  5'- -aUCuuCCGCCGAAgGCAauuuAUCGGCg -3'
miRNA:   3'- caAGuuGGUGGCUUgCGUgu--UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.