miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9989	3'	-50.5	NC_002654.1	+	98250	0.66	0.992861
	Target:  5'- aCGUaagaACAUUGCggUGCCCAACguGCGuGUu -3' miRNA:   3'- -GCA----UGUAACGauGCGGGUUG--UGCuCA- -5'
9989	3'	-50.5	NC_002654.1	+	105020	0.66	0.992861
	Target:  5'- cCGUGCcgUGUUuCGCCCcuGGCGUGGGUc -3' miRNA:   3'- -GCAUGuaACGAuGCGGG--UUGUGCUCA- -5'
9989	3'	-50.5	NC_002654.1	+	38927	0.66	0.989191
	Target:  5'- uGUACA--GC-AUGUCCAugACGCGAGUa -3' miRNA:   3'- gCAUGUaaCGaUGCGGGU--UGUGCUCA- -5'
9989	3'	-50.5	NC_002654.1	+	91684	0.66	0.987686
	Target:  5'- gCGUACGUgacacugGUcAUGCUCGGCgACGAGUa -3' miRNA:   3'- -GCAUGUAa------CGaUGCGGGUUG-UGCUCA- -5'
9989	3'	-50.5	NC_002654.1	+	58514	0.69	0.958766
	Target:  5'- uGUACaAUUGCaGCGCuUCGACACGAu- -3' miRNA:   3'- gCAUG-UAACGaUGCG-GGUUGUGCUca -5'
9989	3'	-50.5	NC_002654.1	+	46649	0.71	0.887058
	Target:  5'- ---cUAUUGCUACgaaaGCCCAACACGAu- -3' miRNA:   3'- gcauGUAACGAUG----CGGGUUGUGCUca -5'
9989	3'	-50.5	NC_002654.1	+	89548	0.72	0.856345
	Target:  5'- gGUAUAUgcGCUACGaCCAAUGCGGGUg -3' miRNA:   3'- gCAUGUAa-CGAUGCgGGUUGUGCUCA- -5'
9989	3'	-50.5	NC_002654.1	+	36035	1.08	0.009752
	Target:  5'- cCGUACAUUGCUACGCCCAACACGAGUu -3' miRNA:   3'- -GCAUGUAACGAUGCGGGUUGUGCUCA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home