Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9992 | 3' | -56 | NC_002654.1 | + | 114294 | 0.66 | 0.895922 |
|
Target: 5'- uCUGCGUCcuCGACUGuuGCUucGGCUg -3' miRNA: 3'- -GACGCAGcuGCUGGCggCGAucUUGA- -5' |
|||||||
| 9992 | 3' | -56 | NC_002654.1 | + | 17679 | 0.66 | 0.895922 |
|
Target: 5'- -cGCuUUGGCGACCGCCGU---AACg -3' miRNA: 3'- gaCGcAGCUGCUGGCGGCGaucUUGa -5' |
|||||||
| 9992 | 3' | -56 | NC_002654.1 | + | 17591 | 0.69 | 0.745478 |
|
Target: 5'- uUGUaaacUGACGACUGCCGCUgauaAGAACUu -3' miRNA: 3'- gACGca--GCUGCUGGCGGCGA----UCUUGA- -5' |
|||||||
| 9992 | 3' | -56 | NC_002654.1 | + | 82291 | 0.73 | 0.517002 |
|
Target: 5'- nUGCGUCGAccgcccgaacgucuaCGGCCGCCGCcgccgccuGAGCg -3' miRNA: 3'- gACGCAGCU---------------GCUGGCGGCGau------CUUGa -5' |
|||||||
| 9992 | 3' | -56 | NC_002654.1 | + | 114324 | 0.75 | 0.437582 |
|
Target: 5'- uCUGCGUCcGCGACUGuuGCUAcGGCUg -3' miRNA: 3'- -GACGCAGcUGCUGGCggCGAUcUUGA- -5' |
|||||||
| 9992 | 3' | -56 | NC_002654.1 | + | 82266 | 1.09 | 0.002766 |
|
Target: 5'- aCUGCGUCGACGACCGCCGCUAGAACUg -3' miRNA: 3'- -GACGCAGCUGCUGGCGGCGAUCUUGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home