miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9992 5' -60.7 NC_002654.1 + 61187 0.67 0.670734
Target:  5'- uCGAAgGuaucauaUCUACGGggacggGCCGCCGCUGUa -3'
miRNA:   3'- -GCUUgC-------AGAUGCCgg----CGGCGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 82471 0.67 0.632297
Target:  5'- -cGACGcUCagGCGGCgGCgGCgGCCGUa -3'
miRNA:   3'- gcUUGC-AGa-UGCCGgCGgCGgCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 117561 0.67 0.632297
Target:  5'- aGAAUGUacgaUACGGCUaauGuuGUCGCCGa -3'
miRNA:   3'- gCUUGCAg---AUGCCGG---CggCGGCGGCg -5'
9992 5' -60.7 NC_002654.1 + 82188 0.67 0.632297
Target:  5'- aGAACuUCUucguCGucuuCCGCCGCCGCCa- -3'
miRNA:   3'- gCUUGcAGAu---GCc---GGCGGCGGCGGcg -5'
9992 5' -60.7 NC_002654.1 + 107662 0.68 0.582088
Target:  5'- uGAGCGcCggaauCGGUCGCagaccaaUGCCGCUGCu -3'
miRNA:   3'- gCUUGCaGau---GCCGGCG-------GCGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 16785 0.69 0.51378
Target:  5'- uCGGGCGUUUGuauuucauuuuCGGCaccgucgcgcaCCGCCGCCGCc -3'
miRNA:   3'- -GCUUGCAGAU-----------GCCGgc---------GGCGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 59234 0.7 0.460513
Target:  5'- -cGACGcaaccaUCUGC-GCCGCCaCCGCCGCc -3'
miRNA:   3'- gcUUGC------AGAUGcCGGCGGcGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 117298 0.71 0.392183
Target:  5'- -cAACGUugCUGCaguaGCCGCUGCCGCCGa -3'
miRNA:   3'- gcUUGCA--GAUGc---CGGCGGCGGCGGCg -5'
9992 5' -60.7 NC_002654.1 + 126806 0.72 0.368313
Target:  5'- aCGAAUGUa-ACGGCacauauuGUCGUCGCCGCa -3'
miRNA:   3'- -GCUUGCAgaUGCCGg------CGGCGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 51789 0.72 0.368313
Target:  5'- gGAGCGUCcGCGGCCaugucguacuuGCCaUCGUCGCa -3'
miRNA:   3'- gCUUGCAGaUGCCGG-----------CGGcGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 82124 0.74 0.294189
Target:  5'- uCGAACGUCUGCGaccaCCGcCCGaacgccugcgaccuCCGCCGCc -3'
miRNA:   3'- -GCUUGCAGAUGCc---GGC-GGC--------------GGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 82332 0.74 0.270553
Target:  5'- uGAGCGUCgccuuccaccACcGCUGCCGCUGCUGCu -3'
miRNA:   3'- gCUUGCAGa---------UGcCGGCGGCGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 26423 0.75 0.241072
Target:  5'- gGGAUGUauuuguaACGGCUGCUGCUGCUGCg -3'
miRNA:   3'- gCUUGCAga-----UGCCGGCGGCGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 26331 0.77 0.194788
Target:  5'- --uGCGUaauuuGCCGCCGCCGCCGCa -3'
miRNA:   3'- gcuUGCAgaugcCGGCGGCGGCGGCG- -5'
9992 5' -60.7 NC_002654.1 + 82304 1.1 0.000931
Target:  5'- cCGAACGUCUACGGCCGCCGCCGCCGCc -3'
miRNA:   3'- -GCUUGCAGAUGCCGGCGGCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.