miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9994 3' -57.7 NC_002654.1 + 35854 0.66 0.809081
Target:  5'- cGCGGUCGAauACGU--ACGCAGCCu -3'
miRNA:   3'- uUGUCAGCUccUGCGucUGCGUCGGc -5'
9994 3' -57.7 NC_002654.1 + 117980 0.66 0.781873
Target:  5'- cAGCAGUCGuuGugGUGGGCGCA-UCGu -3'
miRNA:   3'- -UUGUCAGCucCugCGUCUGCGUcGGC- -5'
9994 3' -57.7 NC_002654.1 + 16602 0.66 0.781873
Target:  5'- gGACAGggcggCGGcGGuGCGC-GACGguGCCGa -3'
miRNA:   3'- -UUGUCa----GCU-CC-UGCGuCUGCguCGGC- -5'
9994 3' -57.7 NC_002654.1 + 50268 0.68 0.693927
Target:  5'- -----aCGAGuGGCgaGCGGACGCAGCCa -3'
miRNA:   3'- uugucaGCUC-CUG--CGUCUGCGUCGGc -5'
9994 3' -57.7 NC_002654.1 + 82415 0.68 0.65308
Target:  5'- cGGCGGUCGucGACGCAGuuccaGCGguGgCGg -3'
miRNA:   3'- -UUGUCAGCucCUGCGUC-----UGCguCgGC- -5'
9994 3' -57.7 NC_002654.1 + 114112 0.7 0.560951
Target:  5'- cAGCcGUaacCGAaGACGCAGuCGCAGCCGa -3'
miRNA:   3'- -UUGuCA---GCUcCUGCGUCuGCGUCGGC- -5'
9994 3' -57.7 NC_002654.1 + 114175 0.98 0.008841
Target:  5'- cAACAGUCGcGGACGCAGACGCAGCCGa -3'
miRNA:   3'- -UUGUCAGCuCCUGCGUCUGCGUCGGC- -5'
9994 3' -57.7 NC_002654.1 + 114145 1.06 0.002592
Target:  5'- cAACAGUCGAGGACGCAGACGCAGCCGu -3'
miRNA:   3'- -UUGUCAGCUCCUGCGUCUGCGUCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.