miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9994 5' -60.1 NC_002654.1 + 35844 0.67 0.666901
Target:  5'- uCGCcagaGGCGCGGucgaauacguACGCAGCCuuGGCCa -3'
miRNA:   3'- -GCGc---CUGCGUC----------UGCGUCGGcuUCGGc -5'
9994 5' -60.1 NC_002654.1 + 65721 0.67 0.656932
Target:  5'- cCGUGGACGCAGACaaugGC-GCUaaaAAGCCu -3'
miRNA:   3'- -GCGCCUGCGUCUG----CGuCGGc--UUCGGc -5'
9994 5' -60.1 NC_002654.1 + 82486 0.67 0.653937
Target:  5'- aGCGGugGUggaaggcgacgcucAGGCgGCGGCgGcGGCCGu -3'
miRNA:   3'- gCGCCugCG--------------UCUG-CGUCGgCuUCGGC- -5'
9994 5' -60.1 NC_002654.1 + 82276 0.67 0.626942
Target:  5'- gGCGGugguCGCAGACGUucgAGCgGuGGUCGc -3'
miRNA:   3'- gCGCCu---GCGUCUGCG---UCGgCuUCGGC- -5'
9994 5' -60.1 NC_002654.1 + 129276 0.68 0.571194
Target:  5'- -aUGGACGCGGACGauGCCGAagaauugcacgcuuuAGCCa -3'
miRNA:   3'- gcGCCUGCGUCUGCguCGGCU---------------UCGGc -5'
9994 5' -60.1 NC_002654.1 + 16614 0.68 0.564293
Target:  5'- gGCGGuGCGC-GACGguGCCGAAaaugaaauacaaacGCCc -3'
miRNA:   3'- gCGCC-UGCGuCUGCguCGGCUU--------------CGGc -5'
9994 5' -60.1 NC_002654.1 + 50271 0.71 0.409961
Target:  5'- aGUGGcgaGCGGACGCAGCCaacauGGCCc -3'
miRNA:   3'- gCGCCug-CGUCUGCGUCGGcu---UCGGc -5'
9994 5' -60.1 NC_002654.1 + 82318 0.76 0.2132
Target:  5'- gGCGGACGUAGAagaucagGCGGCgGAGGUCGc -3'
miRNA:   3'- gCGCCUGCGUCUg------CGUCGgCUUCGGC- -5'
9994 5' -60.1 NC_002654.1 + 114121 0.79 0.129945
Target:  5'- cCGaaGACGCAGuCGCAGCCGAAGCa- -3'
miRNA:   3'- -GCgcCUGCGUCuGCGUCGGCUUCGgc -5'
9994 5' -60.1 NC_002654.1 + 114151 0.83 0.079681
Target:  5'- uCGaGGACGCAGACGCAGCCGuAGCa- -3'
miRNA:   3'- -GCgCCUGCGUCUGCGUCGGCuUCGgc -5'
9994 5' -60.1 NC_002654.1 + 114181 1.08 0.001367
Target:  5'- uCGCGGACGCAGACGCAGCCGAAGCCGu -3'
miRNA:   3'- -GCGCCUGCGUCUGCGUCGGCUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.