miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9995 5' -48.7 NC_002654.1 + 74596 0.66 0.998177
Target:  5'- uUGUCGUGc-UGCCGCCcaACGuGAAUUg -3'
miRNA:   3'- -ACAGCACuuACGGCGGc-UGUuUUUGA- -5'
9995 5' -48.7 NC_002654.1 + 83919 0.66 0.997379
Target:  5'- cGUCGcGAAgauUGuuGUCGACGuuGACg -3'
miRNA:   3'- aCAGCaCUU---ACggCGGCUGUuuUUGa -5'
9995 5' -48.7 NC_002654.1 + 86289 0.66 0.997379
Target:  5'- -aUCGUcGAA--CCGCCGACGAuuGCa -3'
miRNA:   3'- acAGCA-CUUacGGCGGCUGUUuuUGa -5'
9995 5' -48.7 NC_002654.1 + 124433 0.67 0.993099
Target:  5'- ---aGUG-AUGaCCGCCGACAAuuaGAACa -3'
miRNA:   3'- acagCACuUAC-GGCGGCUGUU---UUUGa -5'
9995 5' -48.7 NC_002654.1 + 58960 0.67 0.992996
Target:  5'- cGUCauuauuaGUGAgucGUGUCGgCGGCGAAGACg -3'
miRNA:   3'- aCAG-------CACU---UACGGCgGCUGUUUUUGa -5'
9995 5' -48.7 NC_002654.1 + 125952 0.69 0.982471
Target:  5'- uUGUUGUGGAcaUGCCGCUGAauuGuuACg -3'
miRNA:   3'- -ACAGCACUU--ACGGCGGCUgu-UuuUGa -5'
9995 5' -48.7 NC_002654.1 + 124306 0.69 0.982471
Target:  5'- -aUCGUG-AUGUCGCCGAUcuGGAUa -3'
miRNA:   3'- acAGCACuUACGGCGGCUGuuUUUGa -5'
9995 5' -48.7 NC_002654.1 + 87323 0.72 0.925189
Target:  5'- gGUCGUGuacGUGCCaaCCGACGAcGACa -3'
miRNA:   3'- aCAGCACu--UACGGc-GGCUGUUuUUGa -5'
9995 5' -48.7 NC_002654.1 + 17593 0.73 0.878409
Target:  5'- aGUUGUaaacugacGAcUGCCGCUGAUAAGAACUu -3'
miRNA:   3'- aCAGCA--------CUuACGGCGGCUGUUUUUGA- -5'
9995 5' -48.7 NC_002654.1 + 77412 0.74 0.870694
Target:  5'- cGUCGUcAccGCCGCUGACAAuuauGACUa -3'
miRNA:   3'- aCAGCAcUuaCGGCGGCUGUUu---UUGA- -5'
9995 5' -48.7 NC_002654.1 + 71964 0.75 0.819565
Target:  5'- aGUCGUGuaguUGCCGUCGGCAcgguAACa -3'
miRNA:   3'- aCAGCACuu--ACGGCGGCUGUuu--UUGa -5'
9995 5' -48.7 NC_002654.1 + 121050 1.08 0.013988
Target:  5'- cUGUCGUGAAUGCCGCCGACAAAAACUc -3'
miRNA:   3'- -ACAGCACUUACGGCGGCUGUUUUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.