miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566975 NC_004689.1 Mycobacteriophage Barnyard virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20840 - 10440 86 21 -26.9 NP_818557 5' arm      3' arm
20841 - 11128 90 24.5 -31.4 NP_818557       3' arm
20842 - 11614 87 21 -27.2 NP_818558 5' arm      3' arm
20843 - 11705 89 19 -23.3 NP_818558 5' arm      3' arm
20844 - 11975 90 22.5 -22.8 NP_818559 5' arm      
20845 - 12189 89 21.5 -25.7 NP_818559 5' arm      3' arm
20846 - 12442 88 22.5 -22.1 NP_818559 5' arm      3' arm
20847 - 12668 87 21.5 -27.8 NP_818559 5' arm      3' arm
20848 - 12800 90 21 -28.8 NP_818559       3' arm
20849 - 12916 85 21 -24.9 NP_818559 5' arm      3' arm
20850 - 13020 85 22 -29.9 NP_818559 5' arm      
20851 - 13475 90 21 -26.1 NP_818560 5' arm      3' arm
20852 - 14125 89 20.5 -20.3 NP_818561 5' arm      3' arm
20853 - 14716 88 19 -23.7 NP_818563 5' arm      3' arm
20854 - 15360 89 20 -19.5 NP_818565 5' arm      
20855 - 15451 89 19 -25.2 NP_818565 5' arm      3' arm
20856 - 15771 89 21 -25.2 NP_818566 5' arm      3' arm
20857 - 16159 82 20 -30.4 NP_818567 5' arm      3' arm
20858 - 16638 90 19 -27.6 NP_818568 5' arm      3' arm
20859 - 16928 87 20 -24.5 NP_818568 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.