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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23637 | + | 80148 | 86 | 21 | -23.4 | NP_954933 | 5' arm 3' arm | ||
| 23638 | + | 80709 | 90 | 23.5 | -30.8 | NP_954933 | 5' arm 3' arm | ||
| 23639 | + | 81542 | 87 | 20 | -29.1 | NP_954931 | 5' arm 3' arm | ||
| 23640 | + | 81803 | 90 | 20 | -21.9 | NP_954931 | 5' arm 3' arm | ||
| 23641 | + | 82386 | 90 | 23.5 | -30.5 | NP_954934 | 5' arm 3' arm | ||
| 23642 | + | 82663 | 87 | 20.5 | -23.8 | NP_954934 | 5' arm 3' arm | ||
| 23643 | + | 83169 | 90 | 21.5 | -25.8 | NP_954935 | 5' arm 3' arm | ||
| 23644 | + | 83352 | 88 | 21.5 | -24.6 | NP_954935 | 5' arm 3' arm | ||
| 23645 | + | 83695 | 87 | 20 | -25.2 | NP_954935 | 5' arm 3' arm | ||
| 23646 | + | 83991 | 90 | 22.5 | -24.2 | NP_954935 | 5' arm 3' arm | ||
| 23647 | + | 87589 | 89 | 19.5 | -22.8 | 5' arm 3' arm | |||
| 23648 | + | 88137 | 90 | 23 | -20.8 | NP_954939 | 5' arm 3' arm | ||
| 23649 | + | 88523 | 87 | 19 | -21.7 | NP_954939 | 5' arm 3' arm | ||
| 23650 | + | 89544 | 90 | 20 | -28.1 | NP_954939 | 5' arm 3' arm | ||
| 23651 | + | 91422 | 90 | 19.5 | -19.7 | NP_954940 | 5' arm 3' arm | ||
| 23652 | + | 92399 | 89 | 21 | -20.5 | NP_954940 | 5' arm 3' arm | ||
| 23653 | + | 92767 | 87 | 19 | -27.7 | NP_954941 | 5' arm 3' arm | ||
| 23654 | + | 93270 | 89 | 21 | -27.2 | NP_954941 | 5' arm 3' arm | ||
| 23655 | + | 93775 | 79 | 19 | -23.4 | NP_954942 | 5' arm 3' arm | ||
| 23656 | + | 95247 | 87 | 23.5 | -21.9 | NP_954942 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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