miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
16349	+	49537	90	21	-26.8	NP_665999		5' arm      3' arm
16350	+	49832	88	20	-23.6	NP_666000		5' arm      3' arm
16351	+	50297	86	19	-23.1	NP_666000		5' arm      3' arm
16352	+	50812	89	20	-20.4	NP_666000		5' arm      3' arm
16353	+	51126	89	19	-22.6			5' arm      3' arm
16354	+	51563	84	19.5	-21.2	NP_666001		5' arm      3' arm
16355	+	51665	88	20.5	-25.8	NP_666002		5' arm      3' arm
16356	+	51769	87	20	-20.5	NP_666002		5' arm      3' arm
16357	+	51940	88	21	-23.5	NP_666002		5' arm      3' arm
16358	+	52677	89	21	-30.5	NP_666004		5' arm      3' arm
16359	+	53175	90	20.5	-25.1	NP_666005		5' arm      3' arm
16360	+	53449	89	22.5	-25.1	NP_666006		5' arm      3' arm
16361	+	54525	86	19.5	-20.3	NP_666008		5' arm      3' arm
16362	+	55300	80	20.5	-27.2	NP_666010		5' arm      3' arm
16363	+	55470	89	25	-30.9	NP_666011		5' arm      3' arm
16364	+	56332	90	22.5	-21.7	NP_666012		5' arm      3' arm
16365	+	56497	90	20.5	-23.2	NP_666012		5' arm      3' arm
16366	+	57397	90	20	-24	NP_666013		5' arm      3' arm
16367	+	57658	85	19.5	-21.7	NP_666014		5' arm      3' arm
16368	-	878	87	20.5	-28.2	NP_665920		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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