miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57659643 NC_006658.1 Cotesia congregata virus segment Circle31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31502 - 24824 90 29 -22.6 5' arm      3' arm
31503 - 26336 89 21.5 -28.2 5' arm      3' arm
31504 - 27119 90 21.5 -23 5' arm      3' arm
31505 - 27555 90 24.5 -27.8 YP_184887 5' arm      3' arm
31506 + 15347 88 21 -20.9 5' arm      3' arm
31507 + 19658 88 20 -25.3 YP_184893 5' arm      3' arm
31508 + 23622 90 21.5 -20.5 YP_184894 5' arm      3' arm
31509 + 34142 90 26.5 -25.5 5' arm      3' arm
31510 - 14988 90 29 -22.6 5' arm      3' arm
31511 - 15431 82 21 -32.7 5' arm      3' arm
31512 + 10560 81 25 -30.4 5' arm      3' arm
31513 + 14621 90 21 -20.9 5' arm      3' arm
31514 - 3419 88 27.5 -21 YP_184900 5' arm      3' arm
31515 - 6439 89 20.5 -26 5' arm      3' arm
31516 - 9482 89 22.5 -19.9 5' arm      3' arm
31517 - 10672 90 23.5 -24.5 5' arm      3' arm
31518 + 5190 87 24.5 -24.3 5' arm      3' arm
31519 + 6728 86 27 -29.2 5' arm      3' arm
31520 + 10946 88 20.5 -28.1 5' arm      3' arm
31521 - 6814 89 25.5 -23.9 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.