miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8908 - 27321 86 19.5 -22.4 NP_061531 5' arm      3' arm
8909 - 28733 88 20 -23.5 NP_061533 5' arm      3' arm
8910 - 29072 88 20.5 -21.2 NP_061535 5' arm      3' arm
8911 - 32398 87 19 -25.9 NP_061539 5' arm      
8912 - 34027 89 19 -23.2 NP_061542 5' arm      3' arm
8913 - 34922 90 23 -29.2 NP_061546 5' arm      3' arm
8914 - 35329 89 20 -21.6 NP_061547       3' arm
8915 - 35769 89 19 -20 NP_061547       3' arm
8916 - 37649 89 19 -22.77 5' arm      3' arm
8917 - 38418 90 19 -22.9 NP_061552 5' arm      3' arm
8918 - 40278 88 20 -19.7 NP_061557 5' arm      
8919 - 40576 88 20.5 -20.6 NP_061558 5' arm      3' arm
8920 - 41295 89 21.5 -25 NP_061559 5' arm      3' arm
8921 - 43170 90 19 -21.9 NP_061562 5' arm      3' arm
8922 - 43307 89 20 -24.2 NP_061562 5' arm      3' arm
8923 - 43979 90 22.5 -21.6 5' arm      
8924 - 45266 88 20.5 -23.7 5' arm      3' arm
8925 - 46881 88 21 -26.2 NP_061568 5' arm      3' arm
8926 - 47422 90 20.5 -33.1 NP_061569 5' arm      3' arm
8927 - 47868 85 20 -21 NP_061569 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.