miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
28884	+	141542	89	28.5	-27.9		rlcv-mir-rL1-12	5' arm      3' arm
28885	+	141820	84	27	-34.4		rlcv-mir-rL1-13	3' arm
28886	+	142269	84	22.5	-28.9			5' arm      3' arm
28887	+	142470	90	22	-28.9			5' arm      3' arm
28888	+	142622	88	24.5	-29.2			5' arm      3' arm
28889	+	142826	86	24	-25.2		rlcv-mir-rL1-14	5' arm      3' arm
28890	+	143018	86	24	-25.2		#rlcv-mir-rL1-14	5' arm      3' arm
28891	+	143266	84	24.5	-27.4		rlcv-mir-rL1-15	3' arm
28892	+	143448	90	24	-25			5' arm      3' arm
28893	+	143553	90	28.5	-30.9			3' arm
28894	+	143840	83	26.5	-24.8			5' arm      3' arm
28895	+	144591	78	24	-25.9			5' arm      3' arm
28896	+	146148	90	22.5	-33.5	YP_068004		5' arm      3' arm
28897	+	146358	90	19.5	-19.5	YP_068005		5' arm      3' arm
28898	+	146538	89	22.5	-20.3	YP_068005		5' arm      3' arm
28899	+	146687	90	19	-25.7	YP_068005		5' arm      3' arm
28900	+	148112	90	20	-23.4	YP_068006		5' arm      3' arm
28901	+	148279	90	19.5	-20.8	YP_068006		5' arm      3' arm
28902	+	148614	89	23	-30	YP_068006		5' arm      3' arm
28903	+	148791	86	26.5	-20.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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