miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21293	-	29326	88	23	-30.6	NP_848348		5' arm      3' arm
21292	-	28867	90	21	-25	NP_848347		5' arm      3' arm
21291	-	28110	89	22.5	-25	NP_848345		5' arm      3' arm
21290	-	25405	90	21	-24.6	NP_848342		5' arm      3' arm
21289	-	25308	90	20.5	-24.4	NP_848342		5' arm      3' arm
21288	-	24771	86	20	-24.3	NP_848342		5' arm      3' arm
21287	-	24386	85	24	-25.5			5' arm      3' arm
21286	-	24187	85	24	-25.5			5' arm      3' arm
21285	-	23989	85	24	-25.5			5' arm      3' arm
21284	-	20036	90	23	-24.7			5' arm      3' arm
21283	-	19776	89	19.5	-21			5' arm      3' arm
21282	-	17474	90	23	-22.2	NP_848334		5' arm      3' arm
21281	-	16061	87	20	-20.2	NP_848333		5' arm      3' arm
21280	-	15466	90	24	-25.6	NP_848333		5' arm      3' arm
21279	-	14295	85	21	-24.3	NP_848332		5' arm      3' arm
21278	-	9923	90	21.5	-20.1	NP_848327		5' arm      3' arm
21277	-	8843	89	19.5	-24.1	NP_848326		5' arm      3' arm
21276	-	7361	89	23.5	-21.5	NP_848324		5' arm      3' arm
21275	-	4711	88	20	-26.1	NP_848321		5' arm      3' arm
21274	-	4117	90	21	-22.6	NP_848320		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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