miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
52139181 NC_006273.1 Human herpesvirus 5 (wild type strain Merlin)

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
30174 - 163609 90 21 -27.1 YP_081553 5' arm      3' arm
30173 - 163390 89 20 -26.2 YP_081553 5' arm      3' arm
30172 - 163131 88 20.5 -23.8 YP_081553 5' arm      3' arm
30171 - 162885 89 20.5 -24.1 YP_081553 5' arm      3' arm
30170 - 162655 90 21.5 -24.5 YP_081553 5' arm      3' arm
30169 - 162474 89 21 -21.16 YP_081553 5' arm      3' arm
30168 - 159410 88 19.5 -24.5 5' arm      3' arm
30167 - 156564 78 19.5 -20.7 5' arm      3' arm
30166 - 155896 87 20 -20.7 YP_081551 5' arm      3' arm
30165 - 155723 86 21 -20.2 YP_081551 5' arm      3' arm
30164 - 155338 90 23.5 -22.7 YP_081551 5' arm      3' arm
30163 - 154427 90 20 -23.31 YP_081551 5' arm      3' arm
30162 - 154033 89 19 -20.7 YP_081551 5' arm      3' arm
30161 - 153896 88 22 -19.8 YP_081551 5' arm      3' arm
30160 - 153496 90 20 -27.3 YP_081551 5' arm      3' arm
30159 - 153311 90 22 -23.3 YP_081551 5' arm      3' arm
30158 - 152899 90 19 -20 YP_081550 5' arm      3' arm
30157 - 151890 88 19.5 -19.8 YP_081550 5' arm      3' arm
30156 - 151568 87 20.5 -21.5 YP_081550 5' arm      3' arm
30155 - 151300 90 22 -23.4 YP_081549 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.