miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5422	-	74465	90	21	-35.7	NP_044506		5' arm      3' arm
5421	-	73898	90	20	-26.8	NP_044506		5' arm      3' arm
5420	-	73622	87	21	-24	NP_044506		5' arm      3' arm
5419	-	70873	84	19.5	-30	NP_044504		5' arm      3' arm
5418	-	70505	87	23.5	-28.6	NP_044504		5' arm      3' arm
5417	-	69804	90	19.5	-26.2	NP_044503		5' arm      3' arm
5416	-	68403	89	21.5	-27.3	NP_044502		5' arm      3' arm
5415	-	66547	87	23.5	-22	NP_044500		5' arm      3' arm
5414	-	66090	90	21	-19.4			5' arm      3' arm
5413	-	65704	89	20	-28	NP_044500		5' arm      3' arm
5412	-	64483	89	20	-27.1	NP_044500		5' arm      3' arm
5411	-	63765	89	22.5	-24.7	NP_044500		5' arm      3' arm
5410	-	63490	90	22	-24.2	NP_044500		5' arm      3' arm
5409	-	63109	88	22	-24.6			5' arm      3' arm
5408	-	62325	86	21	-23.1	NP_044499		5' arm      3' arm
5407	-	60536	89	20	-21.8	NP_044499		5' arm      3' arm
5406	-	60180	89	19	-33.5	NP_044499		5' arm      3' arm
5405	-	59408	89	24	-25.5			5' arm      3' arm
5404	-	57602	90	20.5	-22.5	NP_044498		5' arm      3' arm
5403	-	56810	89	19.5	-26.7	NP_044498		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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