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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16136 | - | 141069 | 87 | 20.5 | -25.8 | YP_214098 | 5' arm 3' arm | ||
| 16135 | - | 140881 | 88 | 20 | -23.3 | YP_214098 | 5' arm 3' arm | ||
| 16134 | - | 140261 | 90 | 19 | -35.9 | YP_214098 | 5' arm 3' arm | ||
| 16133 | - | 139535 | 89 | 23 | -24.2 | YP_214096 | 5' arm 3' arm | ||
| 16132 | - | 139393 | 90 | 20.5 | -21.1 | YP_214096 | 5' arm 3' arm | ||
| 16131 | - | 139242 | 90 | 19 | -23.9 | YP_214096 | 5' arm 3' arm | ||
| 16130 | - | 138715 | 87 | 21 | -21.8 | YP_214096 | 5' arm 3' arm | ||
| 16129 | - | 138501 | 90 | 19.5 | -28 | YP_214096 | 5' arm 3' arm | ||
| 16128 | - | 136955 | 90 | 19.5 | -24.2 | YP_214094 | 5' arm 3' arm | ||
| 16127 | - | 135561 | 80 | 21.5 | -32.5 | YP_214093 | 5' arm 3' arm | ||
| 16126 | - | 135268 | 87 | 19.5 | -27.5 | YP_214093 | 5' arm 3' arm | ||
| 16125 | - | 133806 | 90 | 21 | -23 | YP_214091 | 5' arm 3' arm | ||
| 16124 | - | 132103 | 90 | 19 | -21.9 | 5' arm 3' arm | |||
| 16123 | - | 131307 | 89 | 22 | -23.7 | YP_214089 | 5' arm 3' arm | ||
| 16122 | - | 130984 | 89 | 22 | -21.8 | YP_214089 | 5' arm 3' arm | ||
| 16121 | - | 130871 | 87 | 20 | -24.7 | YP_214089 | 5' arm 3' arm | ||
| 16120 | - | 130211 | 90 | 20.5 | -21 | 5' arm 3' arm | |||
| 16119 | - | 128817 | 90 | 21 | -22.3 | YP_214088 | 5' arm 3' arm | ||
| 16118 | - | 126350 | 86 | 20.5 | -28.8 | 5' arm 3' arm | |||
| 16117 | - | 126234 | 90 | 20 | -19.6 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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