miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23630 + 72098 90 21 -22 NP_954929       
23631 + 72600 90 23 -28.8 NP_954929       
23636 + 74766 89 22.5 -21.91 NP_954929       
23632 + 72742 89 20.5 -28.7 NP_954929 5' arm      3' arm
23635 + 74655 90 19 -24.5 NP_954929 5' arm      3' arm
23787 - 75056 90 22 -29.8 NP_954929 5' arm      3' arm
23781 - 71419 90 20 -29.8 NP_954929 5' arm      3' arm
23785 - 74080 89 20 -24.4 NP_954929 5' arm      3' arm
23634 + 73626 88 23 -29.6 NP_954929       
23782 - 71581 90 21 -23.3 NP_954929 5' arm      3' arm
23633 + 73119 87 19 -25.4 NP_954929 5' arm      3' arm
23786 - 74953 85 21 -22.2 NP_954929 5' arm      3' arm
23783 - 72864 90 22.5 -21.3 NP_954929 5' arm      3' arm
23788 - 75654 89 21 -21.5 NP_954930 5' arm      3' arm
23789 - 76947 90 21 -29.9 NP_954931 5' arm      3' arm
23793 - 81537 89 19.5 -21.5 NP_954931 5' arm      3' arm
23795 - 81909 90 20.5 -25.5 NP_954931 5' arm      3' arm
23792 - 81368 90 21.5 -20.4 NP_954931 5' arm      3' arm
23640 + 81803 90 20 -21.9 NP_954931 5' arm      3' arm
23639 + 81542 87 20 -29.1 NP_954931 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.